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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eci: Escherichia coli UTI89 (UPEC)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eci00010 Glycolysis / Gluconeogenesis SBML MML
eci00020 Citrate cycle (TCA cycle) SBML MML
eci00030 Pentose phosphate pathway SBML MML
eci00040 Pentose and glucuronate interconversions SBML MML
eci00051 Fructose and mannose metabolism SBML MML
eci00052 Galactose metabolism SBML MML
eci00053 Ascorbate and aldarate metabolism SBML MML
eci00061 Fatty acid biosynthesis SBML MML
eci00062 Fatty acid elongation in mitochondria SBML MML
eci00071 Fatty acid metabolism SBML MML
eci00100 (Undocumented) SBML MML
eci00120 (Undocumented) SBML MML
eci00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eci00150 Androgen and estrogen metabolism SBML MML
eci00220 (Undocumented) SBML MML
eci00230 Purine metabolism SBML MML
eci00240 Pyrimidine metabolism SBML MML
eci00251 (Undocumented) SBML MML
eci00252 (Undocumented) SBML MML
eci00260 Glycine, serine and threonine metabolism SBML MML
eci00271 (Undocumented) SBML MML
eci00272 (Undocumented) SBML MML
eci00280 Valine, leucine and isoleucine degradation SBML MML
eci00281 Geraniol degradation SBML MML
eci00290 Valine, leucine and isoleucine biosynthesis SBML MML
eci00300 Lysine biosynthesis SBML MML
eci00310 Lysine degradation SBML MML
eci00330 Arginine and proline metabolism SBML MML
eci00340 Histidine metabolism SBML MML
eci00350 Tyrosine metabolism SBML MML
eci00360 Phenylalanine metabolism SBML MML
eci00361 gamma-Hexachlorocyclohexane degradation SBML MML
eci00364 Fluorobenzoate degradation SBML MML
eci00380 Tryptophan metabolism SBML MML
eci00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eci00401 Novobiocin biosynthesis SBML MML
eci00410 beta-Alanine metabolism SBML MML
eci00430 Taurine and hypotaurine metabolism SBML MML
eci00450 Selenoamino acid metabolism SBML MML
eci00460 (Undocumented) SBML MML
eci00471 D-Glutamine and D-glutamate metabolism SBML MML
eci00473 D-Alanine metabolism SBML MML
eci00480 Glutathione metabolism SBML MML
eci00500 Starch and sucrose metabolism SBML MML
eci00520 Amino sugar and nucleotide sugar metabolism SBML MML
eci00521 Streptomycin biosynthesis SBML MML
eci00523 Polyketide sugar unit biosynthesis SBML MML
eci00530 (Undocumented) SBML MML
eci00540 Lipopolysaccharide biosynthesis SBML MML
eci00550 Peptidoglycan biosynthesis SBML MML
eci00561 Glycerolipid metabolism SBML MML
eci00562 Inositol phosphate metabolism SBML MML
eci00564 Glycerophospholipid metabolism SBML MML
eci00565 Ether lipid metabolism SBML MML
eci00590 Arachidonic acid metabolism SBML MML
eci00591 Linoleic acid metabolism SBML MML
eci00592 alpha-Linolenic acid metabolism SBML MML
eci00600 Sphingolipid metabolism SBML MML
eci00620 Pyruvate metabolism SBML MML
eci00624 1- and 2-Methylnaphthalene degradation SBML MML
eci00627 1,4-Dichlorobenzene degradation SBML MML
eci00630 Glyoxylate and dicarboxylate metabolism SBML MML
eci00632 (Undocumented) SBML MML
eci00633 Trinitrotoluene degradation SBML MML
eci00640 Propanoate metabolism SBML MML
eci00641 3-Chloroacrylic acid degradation SBML MML
eci00643 Styrene degradation SBML MML
eci00650 Butanoate metabolism SBML MML
eci00660 C5-Branched dibasic acid metabolism SBML MML
eci00670 One carbon pool by folate SBML MML
eci00680 Methane metabolism SBML MML
eci00710 (Undocumented) SBML MML
eci00720 (Undocumented) SBML MML
eci00730 Thiamine metabolism SBML MML
eci00740 Riboflavin metabolism SBML MML
eci00750 Vitamin B6 metabolism SBML MML
eci00760 Nicotinate and nicotinamide metabolism SBML MML
eci00770 Pantothenate and CoA biosynthesis SBML MML
eci00780 Biotin metabolism SBML MML
eci00785 Lipoic acid metabolism SBML MML
eci00790 Folate biosynthesis SBML MML
eci00791 Atrazine degradation SBML MML
eci00860 Porphyrin and chlorophyll metabolism SBML MML
eci00900 Terpenoid backbone biosynthesis SBML MML
eci00903 (Undocumented) SBML MML
eci00910 Nitrogen metabolism SBML MML
eci00920 Sulfur metabolism SBML MML
eci00930 Caprolactam degradation SBML MML
eci00950 (Undocumented) SBML MML
eci00960 (Undocumented) SBML MML
eci00970 Aminoacyl-tRNA biosynthesis SBML MML
eci00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eci00982 (Undocumented) SBML MML
eci00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.