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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecd: Escherichia coli K-12 DH10B

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecd00010 Glycolysis / Gluconeogenesis SBML MML
ecd00020 Citrate cycle (TCA cycle) SBML MML
ecd00030 Pentose phosphate pathway SBML MML
ecd00040 Pentose and glucuronate interconversions SBML MML
ecd00051 Fructose and mannose metabolism SBML MML
ecd00052 Galactose metabolism SBML MML
ecd00053 Ascorbate and aldarate metabolism SBML MML
ecd00061 Fatty acid biosynthesis SBML MML
ecd00062 Fatty acid elongation in mitochondria SBML MML
ecd00071 Fatty acid metabolism SBML MML
ecd00100 (Undocumented) SBML MML
ecd00120 (Undocumented) SBML MML
ecd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecd00150 Androgen and estrogen metabolism SBML MML
ecd00220 (Undocumented) SBML MML
ecd00230 Purine metabolism SBML MML
ecd00240 Pyrimidine metabolism SBML MML
ecd00251 (Undocumented) SBML MML
ecd00252 (Undocumented) SBML MML
ecd00260 Glycine, serine and threonine metabolism SBML MML
ecd00271 (Undocumented) SBML MML
ecd00272 (Undocumented) SBML MML
ecd00280 Valine, leucine and isoleucine degradation SBML MML
ecd00281 Geraniol degradation SBML MML
ecd00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecd00300 Lysine biosynthesis SBML MML
ecd00310 Lysine degradation SBML MML
ecd00330 Arginine and proline metabolism SBML MML
ecd00340 Histidine metabolism SBML MML
ecd00350 Tyrosine metabolism SBML MML
ecd00360 Phenylalanine metabolism SBML MML
ecd00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecd00362 (Undocumented) SBML MML
ecd00364 Fluorobenzoate degradation SBML MML
ecd00380 Tryptophan metabolism SBML MML
ecd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecd00401 Novobiocin biosynthesis SBML MML
ecd00410 beta-Alanine metabolism SBML MML
ecd00430 Taurine and hypotaurine metabolism SBML MML
ecd00450 Selenoamino acid metabolism SBML MML
ecd00460 (Undocumented) SBML MML
ecd00471 D-Glutamine and D-glutamate metabolism SBML MML
ecd00473 D-Alanine metabolism SBML MML
ecd00480 Glutathione metabolism SBML MML
ecd00500 Starch and sucrose metabolism SBML MML
ecd00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecd00521 Streptomycin biosynthesis SBML MML
ecd00523 Polyketide sugar unit biosynthesis SBML MML
ecd00530 (Undocumented) SBML MML
ecd00540 Lipopolysaccharide biosynthesis SBML MML
ecd00550 Peptidoglycan biosynthesis SBML MML
ecd00561 Glycerolipid metabolism SBML MML
ecd00562 Inositol phosphate metabolism SBML MML
ecd00564 Glycerophospholipid metabolism SBML MML
ecd00590 Arachidonic acid metabolism SBML MML
ecd00592 alpha-Linolenic acid metabolism SBML MML
ecd00600 Sphingolipid metabolism SBML MML
ecd00620 Pyruvate metabolism SBML MML
ecd00624 1- and 2-Methylnaphthalene degradation SBML MML
ecd00626 Naphthalene and anthracene degradation SBML MML
ecd00627 1,4-Dichlorobenzene degradation SBML MML
ecd00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecd00632 (Undocumented) SBML MML
ecd00633 Trinitrotoluene degradation SBML MML
ecd00640 Propanoate metabolism SBML MML
ecd00641 3-Chloroacrylic acid degradation SBML MML
ecd00642 Ethylbenzene degradation SBML MML
ecd00650 Butanoate metabolism SBML MML
ecd00660 C5-Branched dibasic acid metabolism SBML MML
ecd00670 One carbon pool by folate SBML MML
ecd00680 Methane metabolism SBML MML
ecd00710 (Undocumented) SBML MML
ecd00720 (Undocumented) SBML MML
ecd00730 Thiamine metabolism SBML MML
ecd00740 Riboflavin metabolism SBML MML
ecd00750 Vitamin B6 metabolism SBML MML
ecd00760 Nicotinate and nicotinamide metabolism SBML MML
ecd00770 Pantothenate and CoA biosynthesis SBML MML
ecd00780 Biotin metabolism SBML MML
ecd00790 Folate biosynthesis SBML MML
ecd00791 Atrazine degradation SBML MML
ecd00860 Porphyrin and chlorophyll metabolism SBML MML
ecd00900 Terpenoid backbone biosynthesis SBML MML
ecd00903 (Undocumented) SBML MML
ecd00910 Nitrogen metabolism SBML MML
ecd00920 Sulfur metabolism SBML MML
ecd00930 Caprolactam degradation SBML MML
ecd00940 (Undocumented) SBML MML
ecd00950 (Undocumented) SBML MML
ecd00960 (Undocumented) SBML MML
ecd00970 Aminoacyl-tRNA biosynthesis SBML MML
ecd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecd00982 (Undocumented) SBML MML
ecd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.