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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eba: Aromatoleum aromaticum EbN1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eba00010 Glycolysis / Gluconeogenesis SBML MML
eba00020 Citrate cycle (TCA cycle) SBML MML
eba00030 Pentose phosphate pathway SBML MML
eba00040 Pentose and glucuronate interconversions SBML MML
eba00051 Fructose and mannose metabolism SBML MML
eba00052 Galactose metabolism SBML MML
eba00053 Ascorbate and aldarate metabolism SBML MML
eba00061 Fatty acid biosynthesis SBML MML
eba00062 Fatty acid elongation in mitochondria SBML MML
eba00071 Fatty acid metabolism SBML MML
eba00072 Synthesis and degradation of ketone bodies SBML MML
eba00100 (Undocumented) SBML MML
eba00120 (Undocumented) SBML MML
eba00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eba00220 (Undocumented) SBML MML
eba00230 Purine metabolism SBML MML
eba00240 Pyrimidine metabolism SBML MML
eba00251 (Undocumented) SBML MML
eba00252 (Undocumented) SBML MML
eba00260 Glycine, serine and threonine metabolism SBML MML
eba00271 (Undocumented) SBML MML
eba00272 (Undocumented) SBML MML
eba00280 Valine, leucine and isoleucine degradation SBML MML
eba00281 Geraniol degradation SBML MML
eba00290 Valine, leucine and isoleucine biosynthesis SBML MML
eba00300 Lysine biosynthesis SBML MML
eba00310 Lysine degradation SBML MML
eba00330 Arginine and proline metabolism SBML MML
eba00340 Histidine metabolism SBML MML
eba00350 Tyrosine metabolism SBML MML
eba00360 Phenylalanine metabolism SBML MML
eba00361 gamma-Hexachlorocyclohexane degradation SBML MML
eba00362 (Undocumented) SBML MML
eba00380 Tryptophan metabolism SBML MML
eba00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eba00401 Novobiocin biosynthesis SBML MML
eba00410 beta-Alanine metabolism SBML MML
eba00430 Taurine and hypotaurine metabolism SBML MML
eba00450 Selenoamino acid metabolism SBML MML
eba00460 (Undocumented) SBML MML
eba00471 D-Glutamine and D-glutamate metabolism SBML MML
eba00472 D-Arginine and D-ornithine metabolism SBML MML
eba00473 D-Alanine metabolism SBML MML
eba00480 Glutathione metabolism SBML MML
eba00500 Starch and sucrose metabolism SBML MML
eba00520 Amino sugar and nucleotide sugar metabolism SBML MML
eba00521 Streptomycin biosynthesis SBML MML
eba00523 Polyketide sugar unit biosynthesis SBML MML
eba00530 (Undocumented) SBML MML
eba00540 Lipopolysaccharide biosynthesis SBML MML
eba00550 Peptidoglycan biosynthesis SBML MML
eba00561 Glycerolipid metabolism SBML MML
eba00562 Inositol phosphate metabolism SBML MML
eba00564 Glycerophospholipid metabolism SBML MML
eba00590 Arachidonic acid metabolism SBML MML
eba00592 alpha-Linolenic acid metabolism SBML MML
eba00620 Pyruvate metabolism SBML MML
eba00622 Toluene and xylene degradation SBML MML
eba00624 1- and 2-Methylnaphthalene degradation SBML MML
eba00626 Naphthalene and anthracene degradation SBML MML
eba00630 Glyoxylate and dicarboxylate metabolism SBML MML
eba00631 1,2-Dichloroethane degradation SBML MML
eba00632 (Undocumented) SBML MML
eba00640 Propanoate metabolism SBML MML
eba00641 3-Chloroacrylic acid degradation SBML MML
eba00642 Ethylbenzene degradation SBML MML
eba00650 Butanoate metabolism SBML MML
eba00660 C5-Branched dibasic acid metabolism SBML MML
eba00670 One carbon pool by folate SBML MML
eba00680 Methane metabolism SBML MML
eba00710 (Undocumented) SBML MML
eba00720 (Undocumented) SBML MML
eba00730 Thiamine metabolism SBML MML
eba00740 Riboflavin metabolism SBML MML
eba00750 Vitamin B6 metabolism SBML MML
eba00760 Nicotinate and nicotinamide metabolism SBML MML
eba00770 Pantothenate and CoA biosynthesis SBML MML
eba00780 Biotin metabolism SBML MML
eba00785 Lipoic acid metabolism SBML MML
eba00790 Folate biosynthesis SBML MML
eba00860 Porphyrin and chlorophyll metabolism SBML MML
eba00900 Terpenoid backbone biosynthesis SBML MML
eba00903 (Undocumented) SBML MML
eba00910 Nitrogen metabolism SBML MML
eba00920 Sulfur metabolism SBML MML
eba00930 Caprolactam degradation SBML MML
eba00960 (Undocumented) SBML MML
eba00970 Aminoacyl-tRNA biosynthesis SBML MML
eba00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eba00982 (Undocumented) SBML MML
eba00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.