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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dvu: Desulfovibrio vulgaris Hildenborough

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dvu00010 Glycolysis / Gluconeogenesis SBML MML
dvu00020 Citrate cycle (TCA cycle) SBML MML
dvu00030 Pentose phosphate pathway SBML MML
dvu00040 Pentose and glucuronate interconversions SBML MML
dvu00051 Fructose and mannose metabolism SBML MML
dvu00052 Galactose metabolism SBML MML
dvu00053 Ascorbate and aldarate metabolism SBML MML
dvu00061 Fatty acid biosynthesis SBML MML
dvu00071 Fatty acid metabolism SBML MML
dvu00100 (Undocumented) SBML MML
dvu00120 (Undocumented) SBML MML
dvu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dvu00220 (Undocumented) SBML MML
dvu00230 Purine metabolism SBML MML
dvu00240 Pyrimidine metabolism SBML MML
dvu00251 (Undocumented) SBML MML
dvu00252 (Undocumented) SBML MML
dvu00260 Glycine, serine and threonine metabolism SBML MML
dvu00271 (Undocumented) SBML MML
dvu00272 (Undocumented) SBML MML
dvu00280 Valine, leucine and isoleucine degradation SBML MML
dvu00281 Geraniol degradation SBML MML
dvu00290 Valine, leucine and isoleucine biosynthesis SBML MML
dvu00300 Lysine biosynthesis SBML MML
dvu00330 Arginine and proline metabolism SBML MML
dvu00340 Histidine metabolism SBML MML
dvu00350 Tyrosine metabolism SBML MML
dvu00360 Phenylalanine metabolism SBML MML
dvu00361 gamma-Hexachlorocyclohexane degradation SBML MML
dvu00362 (Undocumented) SBML MML
dvu00363 Bisphenol A degradation SBML MML
dvu00380 Tryptophan metabolism SBML MML
dvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dvu00401 Novobiocin biosynthesis SBML MML
dvu00430 Taurine and hypotaurine metabolism SBML MML
dvu00450 Selenoamino acid metabolism SBML MML
dvu00460 (Undocumented) SBML MML
dvu00471 D-Glutamine and D-glutamate metabolism SBML MML
dvu00473 D-Alanine metabolism SBML MML
dvu00500 Starch and sucrose metabolism SBML MML
dvu00520 Amino sugar and nucleotide sugar metabolism SBML MML
dvu00521 Streptomycin biosynthesis SBML MML
dvu00523 Polyketide sugar unit biosynthesis SBML MML
dvu00530 (Undocumented) SBML MML
dvu00540 Lipopolysaccharide biosynthesis SBML MML
dvu00550 Peptidoglycan biosynthesis SBML MML
dvu00561 Glycerolipid metabolism SBML MML
dvu00562 Inositol phosphate metabolism SBML MML
dvu00564 Glycerophospholipid metabolism SBML MML
dvu00620 Pyruvate metabolism SBML MML
dvu00624 1- and 2-Methylnaphthalene degradation SBML MML
dvu00625 (Undocumented) SBML MML
dvu00626 Naphthalene and anthracene degradation SBML MML
dvu00628 Fluorene degradation SBML MML
dvu00630 Glyoxylate and dicarboxylate metabolism SBML MML
dvu00632 (Undocumented) SBML MML
dvu00633 Trinitrotoluene degradation SBML MML
dvu00640 Propanoate metabolism SBML MML
dvu00641 3-Chloroacrylic acid degradation SBML MML
dvu00650 Butanoate metabolism SBML MML
dvu00660 C5-Branched dibasic acid metabolism SBML MML
dvu00670 One carbon pool by folate SBML MML
dvu00680 Methane metabolism SBML MML
dvu00710 (Undocumented) SBML MML
dvu00720 (Undocumented) SBML MML
dvu00730 Thiamine metabolism SBML MML
dvu00740 Riboflavin metabolism SBML MML
dvu00750 Vitamin B6 metabolism SBML MML
dvu00760 Nicotinate and nicotinamide metabolism SBML MML
dvu00770 Pantothenate and CoA biosynthesis SBML MML
dvu00780 Biotin metabolism SBML MML
dvu00785 Lipoic acid metabolism SBML MML
dvu00790 Folate biosynthesis SBML MML
dvu00860 Porphyrin and chlorophyll metabolism SBML MML
dvu00900 Terpenoid backbone biosynthesis SBML MML
dvu00903 (Undocumented) SBML MML
dvu00910 Nitrogen metabolism SBML MML
dvu00920 Sulfur metabolism SBML MML
dvu00940 (Undocumented) SBML MML
dvu00950 (Undocumented) SBML MML
dvu00970 Aminoacyl-tRNA biosynthesis SBML MML
dvu00982 (Undocumented) SBML MML
dvu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.