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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dtni: Tetraodon nigroviridis (green spotted puffer)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dtni00010 Glycolysis / Gluconeogenesis SBML MML
dtni00020 Citrate cycle (TCA cycle) SBML MML
dtni00030 Pentose phosphate pathway SBML MML
dtni00031 (Undocumented) SBML MML
dtni00040 Pentose and glucuronate interconversions SBML MML
dtni00051 Fructose and mannose metabolism SBML MML
dtni00052 Galactose metabolism SBML MML
dtni00053 Ascorbate and aldarate metabolism SBML MML
dtni00061 Fatty acid biosynthesis SBML MML
dtni00062 Fatty acid elongation in mitochondria SBML MML
dtni00071 Fatty acid metabolism SBML MML
dtni00072 Synthesis and degradation of ketone bodies SBML MML
dtni00100 (Undocumented) SBML MML
dtni00120 (Undocumented) SBML MML
dtni00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dtni00140 (Undocumented) SBML MML
dtni00150 Androgen and estrogen metabolism SBML MML
dtni00220 (Undocumented) SBML MML
dtni00230 Purine metabolism SBML MML
dtni00240 Pyrimidine metabolism SBML MML
dtni00251 (Undocumented) SBML MML
dtni00252 (Undocumented) SBML MML
dtni00260 Glycine, serine and threonine metabolism SBML MML
dtni00271 (Undocumented) SBML MML
dtni00272 (Undocumented) SBML MML
dtni00280 Valine, leucine and isoleucine degradation SBML MML
dtni00281 Geraniol degradation SBML MML
dtni00290 Valine, leucine and isoleucine biosynthesis SBML MML
dtni00300 Lysine biosynthesis SBML MML
dtni00310 Lysine degradation SBML MML
dtni00311 Penicillin and cephalosporin biosynthesis SBML MML
dtni00330 Arginine and proline metabolism SBML MML
dtni00340 Histidine metabolism SBML MML
dtni00350 Tyrosine metabolism SBML MML
dtni00360 Phenylalanine metabolism SBML MML
dtni00361 gamma-Hexachlorocyclohexane degradation SBML MML
dtni00363 Bisphenol A degradation SBML MML
dtni00364 Fluorobenzoate degradation SBML MML
dtni00380 Tryptophan metabolism SBML MML
dtni00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dtni00410 beta-Alanine metabolism SBML MML
dtni00430 Taurine and hypotaurine metabolism SBML MML
dtni00440 Phosphonate and phosphinate metabolism SBML MML
dtni00450 Selenoamino acid metabolism SBML MML
dtni00460 (Undocumented) SBML MML
dtni00471 D-Glutamine and D-glutamate metabolism SBML MML
dtni00480 Glutathione metabolism SBML MML
dtni00500 Starch and sucrose metabolism SBML MML
dtni00510 (Undocumented) SBML MML
dtni00520 Amino sugar and nucleotide sugar metabolism SBML MML
dtni00521 Streptomycin biosynthesis SBML MML
dtni00523 Polyketide sugar unit biosynthesis SBML MML
dtni00530 (Undocumented) SBML MML
dtni00540 Lipopolysaccharide biosynthesis SBML MML
dtni00550 Peptidoglycan biosynthesis SBML MML
dtni00561 Glycerolipid metabolism SBML MML
dtni00562 Inositol phosphate metabolism SBML MML
dtni00564 Glycerophospholipid metabolism SBML MML
dtni00565 Ether lipid metabolism SBML MML
dtni00590 Arachidonic acid metabolism SBML MML
dtni00591 Linoleic acid metabolism SBML MML
dtni00592 alpha-Linolenic acid metabolism SBML MML
dtni00600 Sphingolipid metabolism SBML MML
dtni00620 Pyruvate metabolism SBML MML
dtni00624 1- and 2-Methylnaphthalene degradation SBML MML
dtni00626 Naphthalene and anthracene degradation SBML MML
dtni00627 1,4-Dichlorobenzene degradation SBML MML
dtni00630 Glyoxylate and dicarboxylate metabolism SBML MML
dtni00632 (Undocumented) SBML MML
dtni00640 Propanoate metabolism SBML MML
dtni00641 3-Chloroacrylic acid degradation SBML MML
dtni00643 Styrene degradation SBML MML
dtni00650 Butanoate metabolism SBML MML
dtni00670 One carbon pool by folate SBML MML
dtni00680 Methane metabolism SBML MML
dtni00710 (Undocumented) SBML MML
dtni00720 (Undocumented) SBML MML
dtni00730 Thiamine metabolism SBML MML
dtni00740 Riboflavin metabolism SBML MML
dtni00750 Vitamin B6 metabolism SBML MML
dtni00760 Nicotinate and nicotinamide metabolism SBML MML
dtni00770 Pantothenate and CoA biosynthesis SBML MML
dtni00780 Biotin metabolism SBML MML
dtni00790 Folate biosynthesis SBML MML
dtni00860 Porphyrin and chlorophyll metabolism SBML MML
dtni00900 Terpenoid backbone biosynthesis SBML MML
dtni00903 (Undocumented) SBML MML
dtni00910 Nitrogen metabolism SBML MML
dtni00920 Sulfur metabolism SBML MML
dtni00930 Caprolactam degradation SBML MML
dtni00944 (Undocumented) SBML MML
dtni00950 (Undocumented) SBML MML
dtni00960 (Undocumented) SBML MML
dtni00970 Aminoacyl-tRNA biosynthesis SBML MML
dtni00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dtni00982 (Undocumented) SBML MML
dtni00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.