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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dsy: Desulfitobacterium hafniense Y51

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dsy00010 Glycolysis / Gluconeogenesis SBML MML
dsy00020 Citrate cycle (TCA cycle) SBML MML
dsy00030 Pentose phosphate pathway SBML MML
dsy00040 Pentose and glucuronate interconversions SBML MML
dsy00051 Fructose and mannose metabolism SBML MML
dsy00052 Galactose metabolism SBML MML
dsy00053 Ascorbate and aldarate metabolism SBML MML
dsy00061 Fatty acid biosynthesis SBML MML
dsy00062 Fatty acid elongation in mitochondria SBML MML
dsy00071 Fatty acid metabolism SBML MML
dsy00100 (Undocumented) SBML MML
dsy00120 (Undocumented) SBML MML
dsy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dsy00220 (Undocumented) SBML MML
dsy00230 Purine metabolism SBML MML
dsy00240 Pyrimidine metabolism SBML MML
dsy00251 (Undocumented) SBML MML
dsy00252 (Undocumented) SBML MML
dsy00260 Glycine, serine and threonine metabolism SBML MML
dsy00271 (Undocumented) SBML MML
dsy00272 (Undocumented) SBML MML
dsy00280 Valine, leucine and isoleucine degradation SBML MML
dsy00281 Geraniol degradation SBML MML
dsy00290 Valine, leucine and isoleucine biosynthesis SBML MML
dsy00300 Lysine biosynthesis SBML MML
dsy00310 Lysine degradation SBML MML
dsy00330 Arginine and proline metabolism SBML MML
dsy00340 Histidine metabolism SBML MML
dsy00350 Tyrosine metabolism SBML MML
dsy00360 Phenylalanine metabolism SBML MML
dsy00361 gamma-Hexachlorocyclohexane degradation SBML MML
dsy00362 (Undocumented) SBML MML
dsy00380 Tryptophan metabolism SBML MML
dsy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dsy00401 Novobiocin biosynthesis SBML MML
dsy00410 beta-Alanine metabolism SBML MML
dsy00430 Taurine and hypotaurine metabolism SBML MML
dsy00450 Selenoamino acid metabolism SBML MML
dsy00460 (Undocumented) SBML MML
dsy00471 D-Glutamine and D-glutamate metabolism SBML MML
dsy00472 D-Arginine and D-ornithine metabolism SBML MML
dsy00473 D-Alanine metabolism SBML MML
dsy00480 Glutathione metabolism SBML MML
dsy00500 Starch and sucrose metabolism SBML MML
dsy00520 Amino sugar and nucleotide sugar metabolism SBML MML
dsy00521 Streptomycin biosynthesis SBML MML
dsy00523 Polyketide sugar unit biosynthesis SBML MML
dsy00530 (Undocumented) SBML MML
dsy00550 Peptidoglycan biosynthesis SBML MML
dsy00561 Glycerolipid metabolism SBML MML
dsy00564 Glycerophospholipid metabolism SBML MML
dsy00592 alpha-Linolenic acid metabolism SBML MML
dsy00620 Pyruvate metabolism SBML MML
dsy00624 1- and 2-Methylnaphthalene degradation SBML MML
dsy00625 (Undocumented) SBML MML
dsy00628 Fluorene degradation SBML MML
dsy00630 Glyoxylate and dicarboxylate metabolism SBML MML
dsy00631 1,2-Dichloroethane degradation SBML MML
dsy00632 (Undocumented) SBML MML
dsy00640 Propanoate metabolism SBML MML
dsy00641 3-Chloroacrylic acid degradation SBML MML
dsy00642 Ethylbenzene degradation SBML MML
dsy00643 Styrene degradation SBML MML
dsy00650 Butanoate metabolism SBML MML
dsy00660 C5-Branched dibasic acid metabolism SBML MML
dsy00670 One carbon pool by folate SBML MML
dsy00680 Methane metabolism SBML MML
dsy00710 (Undocumented) SBML MML
dsy00720 (Undocumented) SBML MML
dsy00730 Thiamine metabolism SBML MML
dsy00740 Riboflavin metabolism SBML MML
dsy00750 Vitamin B6 metabolism SBML MML
dsy00760 Nicotinate and nicotinamide metabolism SBML MML
dsy00770 Pantothenate and CoA biosynthesis SBML MML
dsy00780 Biotin metabolism SBML MML
dsy00785 Lipoic acid metabolism SBML MML
dsy00790 Folate biosynthesis SBML MML
dsy00860 Porphyrin and chlorophyll metabolism SBML MML
dsy00900 Terpenoid backbone biosynthesis SBML MML
dsy00903 (Undocumented) SBML MML
dsy00910 Nitrogen metabolism SBML MML
dsy00920 Sulfur metabolism SBML MML
dsy00930 Caprolactam degradation SBML MML
dsy00940 (Undocumented) SBML MML
dsy00950 (Undocumented) SBML MML
dsy00960 (Undocumented) SBML MML
dsy00970 Aminoacyl-tRNA biosynthesis SBML MML
dsy00982 (Undocumented) SBML MML
dsy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.