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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dpop: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dpop00010 Glycolysis / Gluconeogenesis SBML MML
dpop00020 Citrate cycle (TCA cycle) SBML MML
dpop00030 Pentose phosphate pathway SBML MML
dpop00031 (Undocumented) SBML MML
dpop00040 Pentose and glucuronate interconversions SBML MML
dpop00051 Fructose and mannose metabolism SBML MML
dpop00052 Galactose metabolism SBML MML
dpop00053 Ascorbate and aldarate metabolism SBML MML
dpop00061 Fatty acid biosynthesis SBML MML
dpop00062 Fatty acid elongation in mitochondria SBML MML
dpop00071 Fatty acid metabolism SBML MML
dpop00072 Synthesis and degradation of ketone bodies SBML MML
dpop00100 (Undocumented) SBML MML
dpop00120 (Undocumented) SBML MML
dpop00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dpop00140 (Undocumented) SBML MML
dpop00150 Androgen and estrogen metabolism SBML MML
dpop00220 (Undocumented) SBML MML
dpop00230 Purine metabolism SBML MML
dpop00240 Pyrimidine metabolism SBML MML
dpop00251 (Undocumented) SBML MML
dpop00252 (Undocumented) SBML MML
dpop00260 Glycine, serine and threonine metabolism SBML MML
dpop00271 (Undocumented) SBML MML
dpop00272 (Undocumented) SBML MML
dpop00280 Valine, leucine and isoleucine degradation SBML MML
dpop00281 Geraniol degradation SBML MML
dpop00290 Valine, leucine and isoleucine biosynthesis SBML MML
dpop00300 Lysine biosynthesis SBML MML
dpop00310 Lysine degradation SBML MML
dpop00330 Arginine and proline metabolism SBML MML
dpop00340 Histidine metabolism SBML MML
dpop00350 Tyrosine metabolism SBML MML
dpop00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
dpop00360 Phenylalanine metabolism SBML MML
dpop00361 gamma-Hexachlorocyclohexane degradation SBML MML
dpop00362 (Undocumented) SBML MML
dpop00363 Bisphenol A degradation SBML MML
dpop00364 Fluorobenzoate degradation SBML MML
dpop00380 Tryptophan metabolism SBML MML
dpop00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dpop00401 Novobiocin biosynthesis SBML MML
dpop00410 beta-Alanine metabolism SBML MML
dpop00430 Taurine and hypotaurine metabolism SBML MML
dpop00440 Phosphonate and phosphinate metabolism SBML MML
dpop00450 Selenoamino acid metabolism SBML MML
dpop00460 (Undocumented) SBML MML
dpop00471 D-Glutamine and D-glutamate metabolism SBML MML
dpop00473 D-Alanine metabolism SBML MML
dpop00480 Glutathione metabolism SBML MML
dpop00500 Starch and sucrose metabolism SBML MML
dpop00510 (Undocumented) SBML MML
dpop00520 Amino sugar and nucleotide sugar metabolism SBML MML
dpop00521 Streptomycin biosynthesis SBML MML
dpop00523 Polyketide sugar unit biosynthesis SBML MML
dpop00530 (Undocumented) SBML MML
dpop00540 Lipopolysaccharide biosynthesis SBML MML
dpop00550 Peptidoglycan biosynthesis SBML MML
dpop00561 Glycerolipid metabolism SBML MML
dpop00562 Inositol phosphate metabolism SBML MML
dpop00564 Glycerophospholipid metabolism SBML MML
dpop00565 Ether lipid metabolism SBML MML
dpop00590 Arachidonic acid metabolism SBML MML
dpop00591 Linoleic acid metabolism SBML MML
dpop00592 alpha-Linolenic acid metabolism SBML MML
dpop00600 Sphingolipid metabolism SBML MML
dpop00620 Pyruvate metabolism SBML MML
dpop00621 (Undocumented) SBML MML
dpop00622 Toluene and xylene degradation SBML MML
dpop00624 1- and 2-Methylnaphthalene degradation SBML MML
dpop00625 (Undocumented) SBML MML
dpop00626 Naphthalene and anthracene degradation SBML MML
dpop00627 1,4-Dichlorobenzene degradation SBML MML
dpop00628 Fluorene degradation SBML MML
dpop00629 Carbazole degradation SBML MML
dpop00630 Glyoxylate and dicarboxylate metabolism SBML MML
dpop00632 (Undocumented) SBML MML
dpop00640 Propanoate metabolism SBML MML
dpop00641 3-Chloroacrylic acid degradation SBML MML
dpop00642 Ethylbenzene degradation SBML MML
dpop00643 Styrene degradation SBML MML
dpop00650 Butanoate metabolism SBML MML
dpop00670 One carbon pool by folate SBML MML
dpop00680 Methane metabolism SBML MML
dpop00710 (Undocumented) SBML MML
dpop00720 (Undocumented) SBML MML
dpop00730 Thiamine metabolism SBML MML
dpop00740 Riboflavin metabolism SBML MML
dpop00750 Vitamin B6 metabolism SBML MML
dpop00760 Nicotinate and nicotinamide metabolism SBML MML
dpop00770 Pantothenate and CoA biosynthesis SBML MML
dpop00780 Biotin metabolism SBML MML
dpop00790 Folate biosynthesis SBML MML
dpop00860 Porphyrin and chlorophyll metabolism SBML MML
dpop00900 Terpenoid backbone biosynthesis SBML MML
dpop00903 (Undocumented) SBML MML
dpop00904 (Undocumented) SBML MML
dpop00906 Carotenoid biosynthesis SBML MML
dpop00908 (Undocumented) SBML MML
dpop00910 Nitrogen metabolism SBML MML
dpop00920 Sulfur metabolism SBML MML
dpop00930 Caprolactam degradation SBML MML
dpop00940 (Undocumented) SBML MML
dpop00941 (Undocumented) SBML MML
dpop00944 (Undocumented) SBML MML
dpop00950 (Undocumented) SBML MML
dpop00960 (Undocumented) SBML MML
dpop00970 Aminoacyl-tRNA biosynthesis SBML MML
dpop00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dpop00982 (Undocumented) SBML MML
dpop00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.