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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dpkn: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dpkn00010 Glycolysis / Gluconeogenesis SBML MML
dpkn00020 Citrate cycle (TCA cycle) SBML MML
dpkn00030 Pentose phosphate pathway SBML MML
dpkn00040 Pentose and glucuronate interconversions SBML MML
dpkn00051 Fructose and mannose metabolism SBML MML
dpkn00052 Galactose metabolism SBML MML
dpkn00061 Fatty acid biosynthesis SBML MML
dpkn00071 Fatty acid metabolism SBML MML
dpkn00100 (Undocumented) SBML MML
dpkn00120 (Undocumented) SBML MML
dpkn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dpkn00150 Androgen and estrogen metabolism SBML MML
dpkn00220 (Undocumented) SBML MML
dpkn00230 Purine metabolism SBML MML
dpkn00240 Pyrimidine metabolism SBML MML
dpkn00251 (Undocumented) SBML MML
dpkn00252 (Undocumented) SBML MML
dpkn00260 Glycine, serine and threonine metabolism SBML MML
dpkn00271 (Undocumented) SBML MML
dpkn00272 (Undocumented) SBML MML
dpkn00280 Valine, leucine and isoleucine degradation SBML MML
dpkn00290 Valine, leucine and isoleucine biosynthesis SBML MML
dpkn00300 Lysine biosynthesis SBML MML
dpkn00310 Lysine degradation SBML MML
dpkn00330 Arginine and proline metabolism SBML MML
dpkn00340 Histidine metabolism SBML MML
dpkn00350 Tyrosine metabolism SBML MML
dpkn00360 Phenylalanine metabolism SBML MML
dpkn00361 gamma-Hexachlorocyclohexane degradation SBML MML
dpkn00380 Tryptophan metabolism SBML MML
dpkn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dpkn00410 beta-Alanine metabolism SBML MML
dpkn00440 Phosphonate and phosphinate metabolism SBML MML
dpkn00450 Selenoamino acid metabolism SBML MML
dpkn00480 Glutathione metabolism SBML MML
dpkn00500 Starch and sucrose metabolism SBML MML
dpkn00510 (Undocumented) SBML MML
dpkn00521 Streptomycin biosynthesis SBML MML
dpkn00530 (Undocumented) SBML MML
dpkn00550 Peptidoglycan biosynthesis SBML MML
dpkn00561 Glycerolipid metabolism SBML MML
dpkn00562 Inositol phosphate metabolism SBML MML
dpkn00564 Glycerophospholipid metabolism SBML MML
dpkn00565 Ether lipid metabolism SBML MML
dpkn00590 Arachidonic acid metabolism SBML MML
dpkn00620 Pyruvate metabolism SBML MML
dpkn00624 1- and 2-Methylnaphthalene degradation SBML MML
dpkn00626 Naphthalene and anthracene degradation SBML MML
dpkn00630 Glyoxylate and dicarboxylate metabolism SBML MML
dpkn00632 (Undocumented) SBML MML
dpkn00640 Propanoate metabolism SBML MML
dpkn00641 3-Chloroacrylic acid degradation SBML MML
dpkn00650 Butanoate metabolism SBML MML
dpkn00670 One carbon pool by folate SBML MML
dpkn00680 Methane metabolism SBML MML
dpkn00710 (Undocumented) SBML MML
dpkn00720 (Undocumented) SBML MML
dpkn00730 Thiamine metabolism SBML MML
dpkn00740 Riboflavin metabolism SBML MML
dpkn00750 Vitamin B6 metabolism SBML MML
dpkn00760 Nicotinate and nicotinamide metabolism SBML MML
dpkn00770 Pantothenate and CoA biosynthesis SBML MML
dpkn00790 Folate biosynthesis SBML MML
dpkn00791 Atrazine degradation SBML MML
dpkn00860 Porphyrin and chlorophyll metabolism SBML MML
dpkn00900 Terpenoid backbone biosynthesis SBML MML
dpkn00903 (Undocumented) SBML MML
dpkn00910 Nitrogen metabolism SBML MML
dpkn00940 (Undocumented) SBML MML
dpkn00960 (Undocumented) SBML MML
dpkn00970 Aminoacyl-tRNA biosynthesis SBML MML
dpkn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dpkn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.