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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dola: Oryzias latipes (Japanese medaka)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dola00010 Glycolysis / Gluconeogenesis SBML MML
dola00020 Citrate cycle (TCA cycle) SBML MML
dola00030 Pentose phosphate pathway SBML MML
dola00031 (Undocumented) SBML MML
dola00040 Pentose and glucuronate interconversions SBML MML
dola00051 Fructose and mannose metabolism SBML MML
dola00052 Galactose metabolism SBML MML
dola00053 Ascorbate and aldarate metabolism SBML MML
dola00061 Fatty acid biosynthesis SBML MML
dola00062 Fatty acid elongation in mitochondria SBML MML
dola00071 Fatty acid metabolism SBML MML
dola00072 Synthesis and degradation of ketone bodies SBML MML
dola00100 (Undocumented) SBML MML
dola00120 (Undocumented) SBML MML
dola00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dola00140 (Undocumented) SBML MML
dola00150 Androgen and estrogen metabolism SBML MML
dola00220 (Undocumented) SBML MML
dola00230 Purine metabolism SBML MML
dola00240 Pyrimidine metabolism SBML MML
dola00251 (Undocumented) SBML MML
dola00252 (Undocumented) SBML MML
dola00260 Glycine, serine and threonine metabolism SBML MML
dola00271 (Undocumented) SBML MML
dola00272 (Undocumented) SBML MML
dola00280 Valine, leucine and isoleucine degradation SBML MML
dola00281 Geraniol degradation SBML MML
dola00290 Valine, leucine and isoleucine biosynthesis SBML MML
dola00300 Lysine biosynthesis SBML MML
dola00310 Lysine degradation SBML MML
dola00330 Arginine and proline metabolism SBML MML
dola00340 Histidine metabolism SBML MML
dola00350 Tyrosine metabolism SBML MML
dola00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
dola00360 Phenylalanine metabolism SBML MML
dola00361 gamma-Hexachlorocyclohexane degradation SBML MML
dola00362 (Undocumented) SBML MML
dola00363 Bisphenol A degradation SBML MML
dola00364 Fluorobenzoate degradation SBML MML
dola00380 Tryptophan metabolism SBML MML
dola00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dola00401 Novobiocin biosynthesis SBML MML
dola00410 beta-Alanine metabolism SBML MML
dola00430 Taurine and hypotaurine metabolism SBML MML
dola00440 Phosphonate and phosphinate metabolism SBML MML
dola00450 Selenoamino acid metabolism SBML MML
dola00460 (Undocumented) SBML MML
dola00471 D-Glutamine and D-glutamate metabolism SBML MML
dola00480 Glutathione metabolism SBML MML
dola00500 Starch and sucrose metabolism SBML MML
dola00510 (Undocumented) SBML MML
dola00520 Amino sugar and nucleotide sugar metabolism SBML MML
dola00521 Streptomycin biosynthesis SBML MML
dola00530 (Undocumented) SBML MML
dola00550 Peptidoglycan biosynthesis SBML MML
dola00561 Glycerolipid metabolism SBML MML
dola00562 Inositol phosphate metabolism SBML MML
dola00564 Glycerophospholipid metabolism SBML MML
dola00565 Ether lipid metabolism SBML MML
dola00590 Arachidonic acid metabolism SBML MML
dola00591 Linoleic acid metabolism SBML MML
dola00592 alpha-Linolenic acid metabolism SBML MML
dola00600 Sphingolipid metabolism SBML MML
dola00620 Pyruvate metabolism SBML MML
dola00622 Toluene and xylene degradation SBML MML
dola00623 2,4-Dichlorobenzoate degradation SBML MML
dola00624 1- and 2-Methylnaphthalene degradation SBML MML
dola00626 Naphthalene and anthracene degradation SBML MML
dola00627 1,4-Dichlorobenzene degradation SBML MML
dola00628 Fluorene degradation SBML MML
dola00630 Glyoxylate and dicarboxylate metabolism SBML MML
dola00632 (Undocumented) SBML MML
dola00640 Propanoate metabolism SBML MML
dola00641 3-Chloroacrylic acid degradation SBML MML
dola00643 Styrene degradation SBML MML
dola00650 Butanoate metabolism SBML MML
dola00660 C5-Branched dibasic acid metabolism SBML MML
dola00670 One carbon pool by folate SBML MML
dola00680 Methane metabolism SBML MML
dola00710 (Undocumented) SBML MML
dola00720 (Undocumented) SBML MML
dola00730 Thiamine metabolism SBML MML
dola00740 Riboflavin metabolism SBML MML
dola00750 Vitamin B6 metabolism SBML MML
dola00760 Nicotinate and nicotinamide metabolism SBML MML
dola00770 Pantothenate and CoA biosynthesis SBML MML
dola00780 Biotin metabolism SBML MML
dola00790 Folate biosynthesis SBML MML
dola00791 Atrazine degradation SBML MML
dola00830 Retinol metabolism SBML MML
dola00860 Porphyrin and chlorophyll metabolism SBML MML
dola00900 Terpenoid backbone biosynthesis SBML MML
dola00903 (Undocumented) SBML MML
dola00910 Nitrogen metabolism SBML MML
dola00920 Sulfur metabolism SBML MML
dola00930 Caprolactam degradation SBML MML
dola00940 (Undocumented) SBML MML
dola00944 (Undocumented) SBML MML
dola00950 (Undocumented) SBML MML
dola00960 (Undocumented) SBML MML
dola00970 Aminoacyl-tRNA biosynthesis SBML MML
dola00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dola00982 (Undocumented) SBML MML
dola00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.