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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism decb: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
decb00010 Glycolysis / Gluconeogenesis SBML MML
decb00020 Citrate cycle (TCA cycle) SBML MML
decb00030 Pentose phosphate pathway SBML MML
decb00031 (Undocumented) SBML MML
decb00040 Pentose and glucuronate interconversions SBML MML
decb00051 Fructose and mannose metabolism SBML MML
decb00052 Galactose metabolism SBML MML
decb00053 Ascorbate and aldarate metabolism SBML MML
decb00061 Fatty acid biosynthesis SBML MML
decb00062 Fatty acid elongation in mitochondria SBML MML
decb00071 Fatty acid metabolism SBML MML
decb00072 Synthesis and degradation of ketone bodies SBML MML
decb00100 (Undocumented) SBML MML
decb00120 (Undocumented) SBML MML
decb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
decb00140 (Undocumented) SBML MML
decb00150 Androgen and estrogen metabolism SBML MML
decb00220 (Undocumented) SBML MML
decb00230 Purine metabolism SBML MML
decb00232 Caffeine metabolism SBML MML
decb00240 Pyrimidine metabolism SBML MML
decb00251 (Undocumented) SBML MML
decb00252 (Undocumented) SBML MML
decb00260 Glycine, serine and threonine metabolism SBML MML
decb00271 (Undocumented) SBML MML
decb00272 (Undocumented) SBML MML
decb00280 Valine, leucine and isoleucine degradation SBML MML
decb00281 Geraniol degradation SBML MML
decb00290 Valine, leucine and isoleucine biosynthesis SBML MML
decb00300 Lysine biosynthesis SBML MML
decb00310 Lysine degradation SBML MML
decb00330 Arginine and proline metabolism SBML MML
decb00340 Histidine metabolism SBML MML
decb00350 Tyrosine metabolism SBML MML
decb00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
decb00360 Phenylalanine metabolism SBML MML
decb00361 gamma-Hexachlorocyclohexane degradation SBML MML
decb00362 (Undocumented) SBML MML
decb00363 Bisphenol A degradation SBML MML
decb00364 Fluorobenzoate degradation SBML MML
decb00380 Tryptophan metabolism SBML MML
decb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
decb00401 Novobiocin biosynthesis SBML MML
decb00410 beta-Alanine metabolism SBML MML
decb00430 Taurine and hypotaurine metabolism SBML MML
decb00440 Phosphonate and phosphinate metabolism SBML MML
decb00450 Selenoamino acid metabolism SBML MML
decb00460 (Undocumented) SBML MML
decb00471 D-Glutamine and D-glutamate metabolism SBML MML
decb00472 D-Arginine and D-ornithine metabolism SBML MML
decb00480 Glutathione metabolism SBML MML
decb00500 Starch and sucrose metabolism SBML MML
decb00510 (Undocumented) SBML MML
decb00520 Amino sugar and nucleotide sugar metabolism SBML MML
decb00521 Streptomycin biosynthesis SBML MML
decb00530 (Undocumented) SBML MML
decb00550 Peptidoglycan biosynthesis SBML MML
decb00561 Glycerolipid metabolism SBML MML
decb00562 Inositol phosphate metabolism SBML MML
decb00564 Glycerophospholipid metabolism SBML MML
decb00565 Ether lipid metabolism SBML MML
decb00590 Arachidonic acid metabolism SBML MML
decb00591 Linoleic acid metabolism SBML MML
decb00592 alpha-Linolenic acid metabolism SBML MML
decb00600 Sphingolipid metabolism SBML MML
decb00620 Pyruvate metabolism SBML MML
decb00623 2,4-Dichlorobenzoate degradation SBML MML
decb00624 1- and 2-Methylnaphthalene degradation SBML MML
decb00625 (Undocumented) SBML MML
decb00626 Naphthalene and anthracene degradation SBML MML
decb00627 1,4-Dichlorobenzene degradation SBML MML
decb00628 Fluorene degradation SBML MML
decb00630 Glyoxylate and dicarboxylate metabolism SBML MML
decb00632 (Undocumented) SBML MML
decb00640 Propanoate metabolism SBML MML
decb00641 3-Chloroacrylic acid degradation SBML MML
decb00643 Styrene degradation SBML MML
decb00650 Butanoate metabolism SBML MML
decb00660 C5-Branched dibasic acid metabolism SBML MML
decb00670 One carbon pool by folate SBML MML
decb00680 Methane metabolism SBML MML
decb00710 (Undocumented) SBML MML
decb00720 (Undocumented) SBML MML
decb00730 Thiamine metabolism SBML MML
decb00740 Riboflavin metabolism SBML MML
decb00750 Vitamin B6 metabolism SBML MML
decb00760 Nicotinate and nicotinamide metabolism SBML MML
decb00770 Pantothenate and CoA biosynthesis SBML MML
decb00780 Biotin metabolism SBML MML
decb00790 Folate biosynthesis SBML MML
decb00791 Atrazine degradation SBML MML
decb00830 Retinol metabolism SBML MML
decb00860 Porphyrin and chlorophyll metabolism SBML MML
decb00900 Terpenoid backbone biosynthesis SBML MML
decb00903 (Undocumented) SBML MML
decb00910 Nitrogen metabolism SBML MML
decb00920 Sulfur metabolism SBML MML
decb00930 Caprolactam degradation SBML MML
decb00940 (Undocumented) SBML MML
decb00950 (Undocumented) SBML MML
decb00960 (Undocumented) SBML MML
decb00970 Aminoacyl-tRNA biosynthesis SBML MML
decb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
decb00982 (Undocumented) SBML MML
decb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.