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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dcbr: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dcbr00010 Glycolysis / Gluconeogenesis SBML MML
dcbr00020 Citrate cycle (TCA cycle) SBML MML
dcbr00030 Pentose phosphate pathway SBML MML
dcbr00031 (Undocumented) SBML MML
dcbr00040 Pentose and glucuronate interconversions SBML MML
dcbr00051 Fructose and mannose metabolism SBML MML
dcbr00052 Galactose metabolism SBML MML
dcbr00053 Ascorbate and aldarate metabolism SBML MML
dcbr00061 Fatty acid biosynthesis SBML MML
dcbr00062 Fatty acid elongation in mitochondria SBML MML
dcbr00071 Fatty acid metabolism SBML MML
dcbr00072 Synthesis and degradation of ketone bodies SBML MML
dcbr00100 (Undocumented) SBML MML
dcbr00120 (Undocumented) SBML MML
dcbr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dcbr00150 Androgen and estrogen metabolism SBML MML
dcbr00220 (Undocumented) SBML MML
dcbr00230 Purine metabolism SBML MML
dcbr00240 Pyrimidine metabolism SBML MML
dcbr00251 (Undocumented) SBML MML
dcbr00252 (Undocumented) SBML MML
dcbr00260 Glycine, serine and threonine metabolism SBML MML
dcbr00271 (Undocumented) SBML MML
dcbr00272 (Undocumented) SBML MML
dcbr00280 Valine, leucine and isoleucine degradation SBML MML
dcbr00281 Geraniol degradation SBML MML
dcbr00290 Valine, leucine and isoleucine biosynthesis SBML MML
dcbr00300 Lysine biosynthesis SBML MML
dcbr00310 Lysine degradation SBML MML
dcbr00330 Arginine and proline metabolism SBML MML
dcbr00340 Histidine metabolism SBML MML
dcbr00350 Tyrosine metabolism SBML MML
dcbr00360 Phenylalanine metabolism SBML MML
dcbr00361 gamma-Hexachlorocyclohexane degradation SBML MML
dcbr00363 Bisphenol A degradation SBML MML
dcbr00380 Tryptophan metabolism SBML MML
dcbr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dcbr00401 Novobiocin biosynthesis SBML MML
dcbr00410 beta-Alanine metabolism SBML MML
dcbr00430 Taurine and hypotaurine metabolism SBML MML
dcbr00440 Phosphonate and phosphinate metabolism SBML MML
dcbr00450 Selenoamino acid metabolism SBML MML
dcbr00460 (Undocumented) SBML MML
dcbr00471 D-Glutamine and D-glutamate metabolism SBML MML
dcbr00472 D-Arginine and D-ornithine metabolism SBML MML
dcbr00480 Glutathione metabolism SBML MML
dcbr00500 Starch and sucrose metabolism SBML MML
dcbr00510 (Undocumented) SBML MML
dcbr00520 Amino sugar and nucleotide sugar metabolism SBML MML
dcbr00521 Streptomycin biosynthesis SBML MML
dcbr00523 Polyketide sugar unit biosynthesis SBML MML
dcbr00530 (Undocumented) SBML MML
dcbr00550 Peptidoglycan biosynthesis SBML MML
dcbr00561 Glycerolipid metabolism SBML MML
dcbr00562 Inositol phosphate metabolism SBML MML
dcbr00564 Glycerophospholipid metabolism SBML MML
dcbr00565 Ether lipid metabolism SBML MML
dcbr00590 Arachidonic acid metabolism SBML MML
dcbr00591 Linoleic acid metabolism SBML MML
dcbr00592 alpha-Linolenic acid metabolism SBML MML
dcbr00600 Sphingolipid metabolism SBML MML
dcbr00620 Pyruvate metabolism SBML MML
dcbr00624 1- and 2-Methylnaphthalene degradation SBML MML
dcbr00626 Naphthalene and anthracene degradation SBML MML
dcbr00630 Glyoxylate and dicarboxylate metabolism SBML MML
dcbr00632 (Undocumented) SBML MML
dcbr00640 Propanoate metabolism SBML MML
dcbr00641 3-Chloroacrylic acid degradation SBML MML
dcbr00643 Styrene degradation SBML MML
dcbr00650 Butanoate metabolism SBML MML
dcbr00660 C5-Branched dibasic acid metabolism SBML MML
dcbr00670 One carbon pool by folate SBML MML
dcbr00680 Methane metabolism SBML MML
dcbr00710 (Undocumented) SBML MML
dcbr00720 (Undocumented) SBML MML
dcbr00730 Thiamine metabolism SBML MML
dcbr00740 Riboflavin metabolism SBML MML
dcbr00750 Vitamin B6 metabolism SBML MML
dcbr00760 Nicotinate and nicotinamide metabolism SBML MML
dcbr00770 Pantothenate and CoA biosynthesis SBML MML
dcbr00780 Biotin metabolism SBML MML
dcbr00790 Folate biosynthesis SBML MML
dcbr00791 Atrazine degradation SBML MML
dcbr00860 Porphyrin and chlorophyll metabolism SBML MML
dcbr00900 Terpenoid backbone biosynthesis SBML MML
dcbr00903 (Undocumented) SBML MML
dcbr00910 Nitrogen metabolism SBML MML
dcbr00920 Sulfur metabolism SBML MML
dcbr00930 Caprolactam degradation SBML MML
dcbr00940 (Undocumented) SBML MML
dcbr00941 (Undocumented) SBML MML
dcbr00950 (Undocumented) SBML MML
dcbr00960 (Undocumented) SBML MML
dcbr00970 Aminoacyl-tRNA biosynthesis SBML MML
dcbr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dcbr00982 (Undocumented) SBML MML
dcbr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.