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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dame: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dame00010 Glycolysis / Gluconeogenesis SBML MML
dame00020 Citrate cycle (TCA cycle) SBML MML
dame00030 Pentose phosphate pathway SBML MML
dame00031 (Undocumented) SBML MML
dame00040 Pentose and glucuronate interconversions SBML MML
dame00051 Fructose and mannose metabolism SBML MML
dame00052 Galactose metabolism SBML MML
dame00053 Ascorbate and aldarate metabolism SBML MML
dame00061 Fatty acid biosynthesis SBML MML
dame00062 Fatty acid elongation in mitochondria SBML MML
dame00071 Fatty acid metabolism SBML MML
dame00072 Synthesis and degradation of ketone bodies SBML MML
dame00100 (Undocumented) SBML MML
dame00120 (Undocumented) SBML MML
dame00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dame00150 Androgen and estrogen metabolism SBML MML
dame00220 (Undocumented) SBML MML
dame00230 Purine metabolism SBML MML
dame00240 Pyrimidine metabolism SBML MML
dame00251 (Undocumented) SBML MML
dame00252 (Undocumented) SBML MML
dame00260 Glycine, serine and threonine metabolism SBML MML
dame00271 (Undocumented) SBML MML
dame00272 (Undocumented) SBML MML
dame00280 Valine, leucine and isoleucine degradation SBML MML
dame00281 Geraniol degradation SBML MML
dame00290 Valine, leucine and isoleucine biosynthesis SBML MML
dame00300 Lysine biosynthesis SBML MML
dame00310 Lysine degradation SBML MML
dame00330 Arginine and proline metabolism SBML MML
dame00340 Histidine metabolism SBML MML
dame00350 Tyrosine metabolism SBML MML
dame00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
dame00360 Phenylalanine metabolism SBML MML
dame00361 gamma-Hexachlorocyclohexane degradation SBML MML
dame00362 (Undocumented) SBML MML
dame00363 Bisphenol A degradation SBML MML
dame00380 Tryptophan metabolism SBML MML
dame00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dame00401 Novobiocin biosynthesis SBML MML
dame00410 beta-Alanine metabolism SBML MML
dame00430 Taurine and hypotaurine metabolism SBML MML
dame00440 Phosphonate and phosphinate metabolism SBML MML
dame00450 Selenoamino acid metabolism SBML MML
dame00460 (Undocumented) SBML MML
dame00471 D-Glutamine and D-glutamate metabolism SBML MML
dame00480 Glutathione metabolism SBML MML
dame00500 Starch and sucrose metabolism SBML MML
dame00510 (Undocumented) SBML MML
dame00520 Amino sugar and nucleotide sugar metabolism SBML MML
dame00521 Streptomycin biosynthesis SBML MML
dame00523 Polyketide sugar unit biosynthesis SBML MML
dame00530 (Undocumented) SBML MML
dame00550 Peptidoglycan biosynthesis SBML MML
dame00561 Glycerolipid metabolism SBML MML
dame00562 Inositol phosphate metabolism SBML MML
dame00564 Glycerophospholipid metabolism SBML MML
dame00565 Ether lipid metabolism SBML MML
dame00590 Arachidonic acid metabolism SBML MML
dame00591 Linoleic acid metabolism SBML MML
dame00592 alpha-Linolenic acid metabolism SBML MML
dame00600 Sphingolipid metabolism SBML MML
dame00620 Pyruvate metabolism SBML MML
dame00624 1- and 2-Methylnaphthalene degradation SBML MML
dame00626 Naphthalene and anthracene degradation SBML MML
dame00630 Glyoxylate and dicarboxylate metabolism SBML MML
dame00632 (Undocumented) SBML MML
dame00640 Propanoate metabolism SBML MML
dame00641 3-Chloroacrylic acid degradation SBML MML
dame00650 Butanoate metabolism SBML MML
dame00660 C5-Branched dibasic acid metabolism SBML MML
dame00670 One carbon pool by folate SBML MML
dame00680 Methane metabolism SBML MML
dame00710 (Undocumented) SBML MML
dame00720 (Undocumented) SBML MML
dame00730 Thiamine metabolism SBML MML
dame00740 Riboflavin metabolism SBML MML
dame00750 Vitamin B6 metabolism SBML MML
dame00760 Nicotinate and nicotinamide metabolism SBML MML
dame00770 Pantothenate and CoA biosynthesis SBML MML
dame00780 Biotin metabolism SBML MML
dame00790 Folate biosynthesis SBML MML
dame00791 Atrazine degradation SBML MML
dame00860 Porphyrin and chlorophyll metabolism SBML MML
dame00900 Terpenoid backbone biosynthesis SBML MML
dame00901 (Undocumented) SBML MML
dame00903 (Undocumented) SBML MML
dame00910 Nitrogen metabolism SBML MML
dame00920 Sulfur metabolism SBML MML
dame00930 Caprolactam degradation SBML MML
dame00940 (Undocumented) SBML MML
dame00941 (Undocumented) SBML MML
dame00944 (Undocumented) SBML MML
dame00950 (Undocumented) SBML MML
dame00960 (Undocumented) SBML MML
dame00970 Aminoacyl-tRNA biosynthesis SBML MML
dame00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dame00982 (Undocumented) SBML MML
dame00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.