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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dac: Delftia acidovorans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dac00010 Glycolysis / Gluconeogenesis SBML MML
dac00020 Citrate cycle (TCA cycle) SBML MML
dac00030 Pentose phosphate pathway SBML MML
dac00031 (Undocumented) SBML MML
dac00040 Pentose and glucuronate interconversions SBML MML
dac00051 Fructose and mannose metabolism SBML MML
dac00052 Galactose metabolism SBML MML
dac00053 Ascorbate and aldarate metabolism SBML MML
dac00061 Fatty acid biosynthesis SBML MML
dac00062 Fatty acid elongation in mitochondria SBML MML
dac00071 Fatty acid metabolism SBML MML
dac00072 Synthesis and degradation of ketone bodies SBML MML
dac00100 (Undocumented) SBML MML
dac00120 (Undocumented) SBML MML
dac00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dac00150 Androgen and estrogen metabolism SBML MML
dac00220 (Undocumented) SBML MML
dac00230 Purine metabolism SBML MML
dac00240 Pyrimidine metabolism SBML MML
dac00251 (Undocumented) SBML MML
dac00252 (Undocumented) SBML MML
dac00260 Glycine, serine and threonine metabolism SBML MML
dac00271 (Undocumented) SBML MML
dac00272 (Undocumented) SBML MML
dac00280 Valine, leucine and isoleucine degradation SBML MML
dac00281 Geraniol degradation SBML MML
dac00290 Valine, leucine and isoleucine biosynthesis SBML MML
dac00300 Lysine biosynthesis SBML MML
dac00310 Lysine degradation SBML MML
dac00311 Penicillin and cephalosporin biosynthesis SBML MML
dac00330 Arginine and proline metabolism SBML MML
dac00340 Histidine metabolism SBML MML
dac00350 Tyrosine metabolism SBML MML
dac00360 Phenylalanine metabolism SBML MML
dac00361 gamma-Hexachlorocyclohexane degradation SBML MML
dac00362 (Undocumented) SBML MML
dac00363 Bisphenol A degradation SBML MML
dac00364 Fluorobenzoate degradation SBML MML
dac00380 Tryptophan metabolism SBML MML
dac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dac00401 Novobiocin biosynthesis SBML MML
dac00410 beta-Alanine metabolism SBML MML
dac00430 Taurine and hypotaurine metabolism SBML MML
dac00440 Phosphonate and phosphinate metabolism SBML MML
dac00450 Selenoamino acid metabolism SBML MML
dac00460 (Undocumented) SBML MML
dac00471 D-Glutamine and D-glutamate metabolism SBML MML
dac00473 D-Alanine metabolism SBML MML
dac00480 Glutathione metabolism SBML MML
dac00500 Starch and sucrose metabolism SBML MML
dac00520 Amino sugar and nucleotide sugar metabolism SBML MML
dac00521 Streptomycin biosynthesis SBML MML
dac00523 Polyketide sugar unit biosynthesis SBML MML
dac00530 (Undocumented) SBML MML
dac00540 Lipopolysaccharide biosynthesis SBML MML
dac00550 Peptidoglycan biosynthesis SBML MML
dac00561 Glycerolipid metabolism SBML MML
dac00562 Inositol phosphate metabolism SBML MML
dac00564 Glycerophospholipid metabolism SBML MML
dac00565 Ether lipid metabolism SBML MML
dac00590 Arachidonic acid metabolism SBML MML
dac00592 alpha-Linolenic acid metabolism SBML MML
dac00620 Pyruvate metabolism SBML MML
dac00622 Toluene and xylene degradation SBML MML
dac00623 2,4-Dichlorobenzoate degradation SBML MML
dac00624 1- and 2-Methylnaphthalene degradation SBML MML
dac00626 Naphthalene and anthracene degradation SBML MML
dac00627 1,4-Dichlorobenzene degradation SBML MML
dac00628 Fluorene degradation SBML MML
dac00629 Carbazole degradation SBML MML
dac00630 Glyoxylate and dicarboxylate metabolism SBML MML
dac00631 1,2-Dichloroethane degradation SBML MML
dac00632 (Undocumented) SBML MML
dac00640 Propanoate metabolism SBML MML
dac00641 3-Chloroacrylic acid degradation SBML MML
dac00642 Ethylbenzene degradation SBML MML
dac00643 Styrene degradation SBML MML
dac00650 Butanoate metabolism SBML MML
dac00660 C5-Branched dibasic acid metabolism SBML MML
dac00670 One carbon pool by folate SBML MML
dac00680 Methane metabolism SBML MML
dac00710 (Undocumented) SBML MML
dac00720 (Undocumented) SBML MML
dac00730 Thiamine metabolism SBML MML
dac00740 Riboflavin metabolism SBML MML
dac00750 Vitamin B6 metabolism SBML MML
dac00760 Nicotinate and nicotinamide metabolism SBML MML
dac00770 Pantothenate and CoA biosynthesis SBML MML
dac00780 Biotin metabolism SBML MML
dac00790 Folate biosynthesis SBML MML
dac00791 Atrazine degradation SBML MML
dac00860 Porphyrin and chlorophyll metabolism SBML MML
dac00900 Terpenoid backbone biosynthesis SBML MML
dac00903 (Undocumented) SBML MML
dac00910 Nitrogen metabolism SBML MML
dac00920 Sulfur metabolism SBML MML
dac00930 Caprolactam degradation SBML MML
dac00950 (Undocumented) SBML MML
dac00960 (Undocumented) SBML MML
dac00970 Aminoacyl-tRNA biosynthesis SBML MML
dac00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dac00982 (Undocumented) SBML MML
dac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.