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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cyt: Cyanothece sp. ATCC 51142

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cyt00010 Glycolysis / Gluconeogenesis SBML MML
cyt00020 Citrate cycle (TCA cycle) SBML MML
cyt00030 Pentose phosphate pathway SBML MML
cyt00040 Pentose and glucuronate interconversions SBML MML
cyt00051 Fructose and mannose metabolism SBML MML
cyt00052 Galactose metabolism SBML MML
cyt00053 Ascorbate and aldarate metabolism SBML MML
cyt00061 Fatty acid biosynthesis SBML MML
cyt00071 Fatty acid metabolism SBML MML
cyt00100 (Undocumented) SBML MML
cyt00120 (Undocumented) SBML MML
cyt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cyt00150 Androgen and estrogen metabolism SBML MML
cyt00220 (Undocumented) SBML MML
cyt00230 Purine metabolism SBML MML
cyt00240 Pyrimidine metabolism SBML MML
cyt00251 (Undocumented) SBML MML
cyt00252 (Undocumented) SBML MML
cyt00260 Glycine, serine and threonine metabolism SBML MML
cyt00271 (Undocumented) SBML MML
cyt00272 (Undocumented) SBML MML
cyt00280 Valine, leucine and isoleucine degradation SBML MML
cyt00290 Valine, leucine and isoleucine biosynthesis SBML MML
cyt00300 Lysine biosynthesis SBML MML
cyt00310 Lysine degradation SBML MML
cyt00330 Arginine and proline metabolism SBML MML
cyt00340 Histidine metabolism SBML MML
cyt00350 Tyrosine metabolism SBML MML
cyt00360 Phenylalanine metabolism SBML MML
cyt00361 gamma-Hexachlorocyclohexane degradation SBML MML
cyt00362 (Undocumented) SBML MML
cyt00364 Fluorobenzoate degradation SBML MML
cyt00380 Tryptophan metabolism SBML MML
cyt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cyt00401 Novobiocin biosynthesis SBML MML
cyt00410 beta-Alanine metabolism SBML MML
cyt00430 Taurine and hypotaurine metabolism SBML MML
cyt00450 Selenoamino acid metabolism SBML MML
cyt00460 (Undocumented) SBML MML
cyt00471 D-Glutamine and D-glutamate metabolism SBML MML
cyt00473 D-Alanine metabolism SBML MML
cyt00480 Glutathione metabolism SBML MML
cyt00500 Starch and sucrose metabolism SBML MML
cyt00520 Amino sugar and nucleotide sugar metabolism SBML MML
cyt00521 Streptomycin biosynthesis SBML MML
cyt00523 Polyketide sugar unit biosynthesis SBML MML
cyt00530 (Undocumented) SBML MML
cyt00540 Lipopolysaccharide biosynthesis SBML MML
cyt00550 Peptidoglycan biosynthesis SBML MML
cyt00561 Glycerolipid metabolism SBML MML
cyt00562 Inositol phosphate metabolism SBML MML
cyt00564 Glycerophospholipid metabolism SBML MML
cyt00600 Sphingolipid metabolism SBML MML
cyt00620 Pyruvate metabolism SBML MML
cyt00624 1- and 2-Methylnaphthalene degradation SBML MML
cyt00626 Naphthalene and anthracene degradation SBML MML
cyt00627 1,4-Dichlorobenzene degradation SBML MML
cyt00630 Glyoxylate and dicarboxylate metabolism SBML MML
cyt00631 1,2-Dichloroethane degradation SBML MML
cyt00632 (Undocumented) SBML MML
cyt00640 Propanoate metabolism SBML MML
cyt00641 3-Chloroacrylic acid degradation SBML MML
cyt00643 Styrene degradation SBML MML
cyt00650 Butanoate metabolism SBML MML
cyt00660 C5-Branched dibasic acid metabolism SBML MML
cyt00670 One carbon pool by folate SBML MML
cyt00680 Methane metabolism SBML MML
cyt00710 (Undocumented) SBML MML
cyt00720 (Undocumented) SBML MML
cyt00730 Thiamine metabolism SBML MML
cyt00740 Riboflavin metabolism SBML MML
cyt00750 Vitamin B6 metabolism SBML MML
cyt00760 Nicotinate and nicotinamide metabolism SBML MML
cyt00770 Pantothenate and CoA biosynthesis SBML MML
cyt00780 Biotin metabolism SBML MML
cyt00790 Folate biosynthesis SBML MML
cyt00860 Porphyrin and chlorophyll metabolism SBML MML
cyt00900 Terpenoid backbone biosynthesis SBML MML
cyt00903 (Undocumented) SBML MML
cyt00906 Carotenoid biosynthesis SBML MML
cyt00910 Nitrogen metabolism SBML MML
cyt00920 Sulfur metabolism SBML MML
cyt00930 Caprolactam degradation SBML MML
cyt00940 (Undocumented) SBML MML
cyt00941 (Undocumented) SBML MML
cyt00970 Aminoacyl-tRNA biosynthesis SBML MML
cyt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cyt00982 (Undocumented) SBML MML
cyt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.