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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cvi: Chromobacterium violaceum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cvi00010 Glycolysis / Gluconeogenesis SBML MML
cvi00020 Citrate cycle (TCA cycle) SBML MML
cvi00030 Pentose phosphate pathway SBML MML
cvi00031 (Undocumented) SBML MML
cvi00040 Pentose and glucuronate interconversions SBML MML
cvi00051 Fructose and mannose metabolism SBML MML
cvi00052 Galactose metabolism SBML MML
cvi00053 Ascorbate and aldarate metabolism SBML MML
cvi00061 Fatty acid biosynthesis SBML MML
cvi00062 Fatty acid elongation in mitochondria SBML MML
cvi00071 Fatty acid metabolism SBML MML
cvi00072 Synthesis and degradation of ketone bodies SBML MML
cvi00100 (Undocumented) SBML MML
cvi00120 (Undocumented) SBML MML
cvi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cvi00220 (Undocumented) SBML MML
cvi00230 Purine metabolism SBML MML
cvi00240 Pyrimidine metabolism SBML MML
cvi00251 (Undocumented) SBML MML
cvi00252 (Undocumented) SBML MML
cvi00260 Glycine, serine and threonine metabolism SBML MML
cvi00271 (Undocumented) SBML MML
cvi00272 (Undocumented) SBML MML
cvi00280 Valine, leucine and isoleucine degradation SBML MML
cvi00281 Geraniol degradation SBML MML
cvi00290 Valine, leucine and isoleucine biosynthesis SBML MML
cvi00300 Lysine biosynthesis SBML MML
cvi00310 Lysine degradation SBML MML
cvi00311 Penicillin and cephalosporin biosynthesis SBML MML
cvi00330 Arginine and proline metabolism SBML MML
cvi00340 Histidine metabolism SBML MML
cvi00350 Tyrosine metabolism SBML MML
cvi00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
cvi00360 Phenylalanine metabolism SBML MML
cvi00361 gamma-Hexachlorocyclohexane degradation SBML MML
cvi00362 (Undocumented) SBML MML
cvi00364 Fluorobenzoate degradation SBML MML
cvi00380 Tryptophan metabolism SBML MML
cvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cvi00401 Novobiocin biosynthesis SBML MML
cvi00410 beta-Alanine metabolism SBML MML
cvi00430 Taurine and hypotaurine metabolism SBML MML
cvi00440 Phosphonate and phosphinate metabolism SBML MML
cvi00450 Selenoamino acid metabolism SBML MML
cvi00460 (Undocumented) SBML MML
cvi00471 D-Glutamine and D-glutamate metabolism SBML MML
cvi00473 D-Alanine metabolism SBML MML
cvi00480 Glutathione metabolism SBML MML
cvi00500 Starch and sucrose metabolism SBML MML
cvi00510 (Undocumented) SBML MML
cvi00520 Amino sugar and nucleotide sugar metabolism SBML MML
cvi00521 Streptomycin biosynthesis SBML MML
cvi00523 Polyketide sugar unit biosynthesis SBML MML
cvi00530 (Undocumented) SBML MML
cvi00540 Lipopolysaccharide biosynthesis SBML MML
cvi00550 Peptidoglycan biosynthesis SBML MML
cvi00561 Glycerolipid metabolism SBML MML
cvi00562 Inositol phosphate metabolism SBML MML
cvi00564 Glycerophospholipid metabolism SBML MML
cvi00565 Ether lipid metabolism SBML MML
cvi00590 Arachidonic acid metabolism SBML MML
cvi00592 alpha-Linolenic acid metabolism SBML MML
cvi00620 Pyruvate metabolism SBML MML
cvi00621 (Undocumented) SBML MML
cvi00623 2,4-Dichlorobenzoate degradation SBML MML
cvi00624 1- and 2-Methylnaphthalene degradation SBML MML
cvi00626 Naphthalene and anthracene degradation SBML MML
cvi00627 1,4-Dichlorobenzene degradation SBML MML
cvi00628 Fluorene degradation SBML MML
cvi00630 Glyoxylate and dicarboxylate metabolism SBML MML
cvi00631 1,2-Dichloroethane degradation SBML MML
cvi00632 (Undocumented) SBML MML
cvi00633 Trinitrotoluene degradation SBML MML
cvi00640 Propanoate metabolism SBML MML
cvi00641 3-Chloroacrylic acid degradation SBML MML
cvi00642 Ethylbenzene degradation SBML MML
cvi00643 Styrene degradation SBML MML
cvi00650 Butanoate metabolism SBML MML
cvi00660 C5-Branched dibasic acid metabolism SBML MML
cvi00670 One carbon pool by folate SBML MML
cvi00680 Methane metabolism SBML MML
cvi00710 (Undocumented) SBML MML
cvi00720 (Undocumented) SBML MML
cvi00730 Thiamine metabolism SBML MML
cvi00740 Riboflavin metabolism SBML MML
cvi00750 Vitamin B6 metabolism SBML MML
cvi00760 Nicotinate and nicotinamide metabolism SBML MML
cvi00770 Pantothenate and CoA biosynthesis SBML MML
cvi00780 Biotin metabolism SBML MML
cvi00785 Lipoic acid metabolism SBML MML
cvi00790 Folate biosynthesis SBML MML
cvi00791 Atrazine degradation SBML MML
cvi00860 Porphyrin and chlorophyll metabolism SBML MML
cvi00900 Terpenoid backbone biosynthesis SBML MML
cvi00903 (Undocumented) SBML MML
cvi00910 Nitrogen metabolism SBML MML
cvi00920 Sulfur metabolism SBML MML
cvi00930 Caprolactam degradation SBML MML
cvi00940 (Undocumented) SBML MML
cvi00941 (Undocumented) SBML MML
cvi00950 (Undocumented) SBML MML
cvi00960 (Undocumented) SBML MML
cvi00970 Aminoacyl-tRNA biosynthesis SBML MML
cvi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cvi00982 (Undocumented) SBML MML
cvi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.