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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cur: Corynebacterium urealyticum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cur00010 Glycolysis / Gluconeogenesis SBML MML
cur00020 Citrate cycle (TCA cycle) SBML MML
cur00030 Pentose phosphate pathway SBML MML
cur00040 Pentose and glucuronate interconversions SBML MML
cur00051 Fructose and mannose metabolism SBML MML
cur00052 Galactose metabolism SBML MML
cur00053 Ascorbate and aldarate metabolism SBML MML
cur00061 Fatty acid biosynthesis SBML MML
cur00071 Fatty acid metabolism SBML MML
cur00100 (Undocumented) SBML MML
cur00120 (Undocumented) SBML MML
cur00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cur00220 (Undocumented) SBML MML
cur00230 Purine metabolism SBML MML
cur00240 Pyrimidine metabolism SBML MML
cur00251 (Undocumented) SBML MML
cur00252 (Undocumented) SBML MML
cur00260 Glycine, serine and threonine metabolism SBML MML
cur00271 (Undocumented) SBML MML
cur00272 (Undocumented) SBML MML
cur00280 Valine, leucine and isoleucine degradation SBML MML
cur00281 Geraniol degradation SBML MML
cur00290 Valine, leucine and isoleucine biosynthesis SBML MML
cur00300 Lysine biosynthesis SBML MML
cur00310 Lysine degradation SBML MML
cur00330 Arginine and proline metabolism SBML MML
cur00340 Histidine metabolism SBML MML
cur00350 Tyrosine metabolism SBML MML
cur00360 Phenylalanine metabolism SBML MML
cur00362 (Undocumented) SBML MML
cur00380 Tryptophan metabolism SBML MML
cur00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cur00401 Novobiocin biosynthesis SBML MML
cur00410 beta-Alanine metabolism SBML MML
cur00430 Taurine and hypotaurine metabolism SBML MML
cur00450 Selenoamino acid metabolism SBML MML
cur00460 (Undocumented) SBML MML
cur00471 D-Glutamine and D-glutamate metabolism SBML MML
cur00473 D-Alanine metabolism SBML MML
cur00480 Glutathione metabolism SBML MML
cur00500 Starch and sucrose metabolism SBML MML
cur00510 (Undocumented) SBML MML
cur00520 Amino sugar and nucleotide sugar metabolism SBML MML
cur00521 Streptomycin biosynthesis SBML MML
cur00523 Polyketide sugar unit biosynthesis SBML MML
cur00530 (Undocumented) SBML MML
cur00550 Peptidoglycan biosynthesis SBML MML
cur00561 Glycerolipid metabolism SBML MML
cur00562 Inositol phosphate metabolism SBML MML
cur00564 Glycerophospholipid metabolism SBML MML
cur00592 alpha-Linolenic acid metabolism SBML MML
cur00620 Pyruvate metabolism SBML MML
cur00624 1- and 2-Methylnaphthalene degradation SBML MML
cur00626 Naphthalene and anthracene degradation SBML MML
cur00630 Glyoxylate and dicarboxylate metabolism SBML MML
cur00632 (Undocumented) SBML MML
cur00640 Propanoate metabolism SBML MML
cur00641 3-Chloroacrylic acid degradation SBML MML
cur00642 Ethylbenzene degradation SBML MML
cur00643 Styrene degradation SBML MML
cur00650 Butanoate metabolism SBML MML
cur00670 One carbon pool by folate SBML MML
cur00680 Methane metabolism SBML MML
cur00710 (Undocumented) SBML MML
cur00720 (Undocumented) SBML MML
cur00730 Thiamine metabolism SBML MML
cur00740 Riboflavin metabolism SBML MML
cur00750 Vitamin B6 metabolism SBML MML
cur00760 Nicotinate and nicotinamide metabolism SBML MML
cur00770 Pantothenate and CoA biosynthesis SBML MML
cur00780 Biotin metabolism SBML MML
cur00790 Folate biosynthesis SBML MML
cur00791 Atrazine degradation SBML MML
cur00860 Porphyrin and chlorophyll metabolism SBML MML
cur00900 Terpenoid backbone biosynthesis SBML MML
cur00903 (Undocumented) SBML MML
cur00910 Nitrogen metabolism SBML MML
cur00920 Sulfur metabolism SBML MML
cur00930 Caprolactam degradation SBML MML
cur00960 (Undocumented) SBML MML
cur00970 Aminoacyl-tRNA biosynthesis SBML MML
cur00982 (Undocumented) SBML MML
cur00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.