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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cth: Clostridium thermocellum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cth00010 Glycolysis / Gluconeogenesis SBML MML
cth00020 Citrate cycle (TCA cycle) SBML MML
cth00030 Pentose phosphate pathway SBML MML
cth00040 Pentose and glucuronate interconversions SBML MML
cth00051 Fructose and mannose metabolism SBML MML
cth00052 Galactose metabolism SBML MML
cth00053 Ascorbate and aldarate metabolism SBML MML
cth00061 Fatty acid biosynthesis SBML MML
cth00071 Fatty acid metabolism SBML MML
cth00100 (Undocumented) SBML MML
cth00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cth00220 (Undocumented) SBML MML
cth00230 Purine metabolism SBML MML
cth00240 Pyrimidine metabolism SBML MML
cth00251 (Undocumented) SBML MML
cth00252 (Undocumented) SBML MML
cth00260 Glycine, serine and threonine metabolism SBML MML
cth00271 (Undocumented) SBML MML
cth00272 (Undocumented) SBML MML
cth00280 Valine, leucine and isoleucine degradation SBML MML
cth00290 Valine, leucine and isoleucine biosynthesis SBML MML
cth00300 Lysine biosynthesis SBML MML
cth00330 Arginine and proline metabolism SBML MML
cth00340 Histidine metabolism SBML MML
cth00350 Tyrosine metabolism SBML MML
cth00360 Phenylalanine metabolism SBML MML
cth00380 Tryptophan metabolism SBML MML
cth00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cth00401 Novobiocin biosynthesis SBML MML
cth00410 beta-Alanine metabolism SBML MML
cth00430 Taurine and hypotaurine metabolism SBML MML
cth00450 Selenoamino acid metabolism SBML MML
cth00460 (Undocumented) SBML MML
cth00471 D-Glutamine and D-glutamate metabolism SBML MML
cth00473 D-Alanine metabolism SBML MML
cth00500 Starch and sucrose metabolism SBML MML
cth00520 Amino sugar and nucleotide sugar metabolism SBML MML
cth00521 Streptomycin biosynthesis SBML MML
cth00523 Polyketide sugar unit biosynthesis SBML MML
cth00530 (Undocumented) SBML MML
cth00550 Peptidoglycan biosynthesis SBML MML
cth00561 Glycerolipid metabolism SBML MML
cth00564 Glycerophospholipid metabolism SBML MML
cth00565 Ether lipid metabolism SBML MML
cth00620 Pyruvate metabolism SBML MML
cth00630 Glyoxylate and dicarboxylate metabolism SBML MML
cth00633 Trinitrotoluene degradation SBML MML
cth00640 Propanoate metabolism SBML MML
cth00641 3-Chloroacrylic acid degradation SBML MML
cth00650 Butanoate metabolism SBML MML
cth00670 One carbon pool by folate SBML MML
cth00680 Methane metabolism SBML MML
cth00710 (Undocumented) SBML MML
cth00720 (Undocumented) SBML MML
cth00730 Thiamine metabolism SBML MML
cth00740 Riboflavin metabolism SBML MML
cth00750 Vitamin B6 metabolism SBML MML
cth00760 Nicotinate and nicotinamide metabolism SBML MML
cth00770 Pantothenate and CoA biosynthesis SBML MML
cth00780 Biotin metabolism SBML MML
cth00790 Folate biosynthesis SBML MML
cth00791 Atrazine degradation SBML MML
cth00860 Porphyrin and chlorophyll metabolism SBML MML
cth00900 Terpenoid backbone biosynthesis SBML MML
cth00910 Nitrogen metabolism SBML MML
cth00920 Sulfur metabolism SBML MML
cth00970 Aminoacyl-tRNA biosynthesis SBML MML
cth00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.