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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ctc: Clostridium tetani E88

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ctc00010 Glycolysis / Gluconeogenesis SBML MML
ctc00020 Citrate cycle (TCA cycle) SBML MML
ctc00030 Pentose phosphate pathway SBML MML
ctc00031 (Undocumented) SBML MML
ctc00040 Pentose and glucuronate interconversions SBML MML
ctc00051 Fructose and mannose metabolism SBML MML
ctc00052 Galactose metabolism SBML MML
ctc00061 Fatty acid biosynthesis SBML MML
ctc00062 Fatty acid elongation in mitochondria SBML MML
ctc00071 Fatty acid metabolism SBML MML
ctc00100 (Undocumented) SBML MML
ctc00120 (Undocumented) SBML MML
ctc00220 (Undocumented) SBML MML
ctc00230 Purine metabolism SBML MML
ctc00240 Pyrimidine metabolism SBML MML
ctc00251 (Undocumented) SBML MML
ctc00252 (Undocumented) SBML MML
ctc00260 Glycine, serine and threonine metabolism SBML MML
ctc00271 (Undocumented) SBML MML
ctc00272 (Undocumented) SBML MML
ctc00280 Valine, leucine and isoleucine degradation SBML MML
ctc00281 Geraniol degradation SBML MML
ctc00290 Valine, leucine and isoleucine biosynthesis SBML MML
ctc00300 Lysine biosynthesis SBML MML
ctc00310 Lysine degradation SBML MML
ctc00330 Arginine and proline metabolism SBML MML
ctc00340 Histidine metabolism SBML MML
ctc00350 Tyrosine metabolism SBML MML
ctc00360 Phenylalanine metabolism SBML MML
ctc00361 gamma-Hexachlorocyclohexane degradation SBML MML
ctc00362 (Undocumented) SBML MML
ctc00380 Tryptophan metabolism SBML MML
ctc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ctc00401 Novobiocin biosynthesis SBML MML
ctc00410 beta-Alanine metabolism SBML MML
ctc00430 Taurine and hypotaurine metabolism SBML MML
ctc00440 Phosphonate and phosphinate metabolism SBML MML
ctc00450 Selenoamino acid metabolism SBML MML
ctc00460 (Undocumented) SBML MML
ctc00471 D-Glutamine and D-glutamate metabolism SBML MML
ctc00473 D-Alanine metabolism SBML MML
ctc00500 Starch and sucrose metabolism SBML MML
ctc00510 (Undocumented) SBML MML
ctc00520 Amino sugar and nucleotide sugar metabolism SBML MML
ctc00521 Streptomycin biosynthesis SBML MML
ctc00530 (Undocumented) SBML MML
ctc00550 Peptidoglycan biosynthesis SBML MML
ctc00561 Glycerolipid metabolism SBML MML
ctc00562 Inositol phosphate metabolism SBML MML
ctc00564 Glycerophospholipid metabolism SBML MML
ctc00620 Pyruvate metabolism SBML MML
ctc00624 1- and 2-Methylnaphthalene degradation SBML MML
ctc00630 Glyoxylate and dicarboxylate metabolism SBML MML
ctc00631 1,2-Dichloroethane degradation SBML MML
ctc00632 (Undocumented) SBML MML
ctc00633 Trinitrotoluene degradation SBML MML
ctc00640 Propanoate metabolism SBML MML
ctc00641 3-Chloroacrylic acid degradation SBML MML
ctc00650 Butanoate metabolism SBML MML
ctc00660 C5-Branched dibasic acid metabolism SBML MML
ctc00670 One carbon pool by folate SBML MML
ctc00680 Methane metabolism SBML MML
ctc00710 (Undocumented) SBML MML
ctc00720 (Undocumented) SBML MML
ctc00730 Thiamine metabolism SBML MML
ctc00740 Riboflavin metabolism SBML MML
ctc00750 Vitamin B6 metabolism SBML MML
ctc00760 Nicotinate and nicotinamide metabolism SBML MML
ctc00770 Pantothenate and CoA biosynthesis SBML MML
ctc00780 Biotin metabolism SBML MML
ctc00785 Lipoic acid metabolism SBML MML
ctc00790 Folate biosynthesis SBML MML
ctc00860 Porphyrin and chlorophyll metabolism SBML MML
ctc00900 Terpenoid backbone biosynthesis SBML MML
ctc00903 (Undocumented) SBML MML
ctc00910 Nitrogen metabolism SBML MML
ctc00920 Sulfur metabolism SBML MML
ctc00930 Caprolactam degradation SBML MML
ctc00940 (Undocumented) SBML MML
ctc00950 (Undocumented) SBML MML
ctc00960 (Undocumented) SBML MML
ctc00970 Aminoacyl-tRNA biosynthesis SBML MML
ctc00982 (Undocumented) SBML MML
ctc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.