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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism csc: Caldicellulosiruptor saccharolyticus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
csc00010 Glycolysis / Gluconeogenesis SBML MML
csc00020 Citrate cycle (TCA cycle) SBML MML
csc00030 Pentose phosphate pathway SBML MML
csc00040 Pentose and glucuronate interconversions SBML MML
csc00051 Fructose and mannose metabolism SBML MML
csc00052 Galactose metabolism SBML MML
csc00061 Fatty acid biosynthesis SBML MML
csc00071 Fatty acid metabolism SBML MML
csc00100 (Undocumented) SBML MML
csc00120 (Undocumented) SBML MML
csc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
csc00220 (Undocumented) SBML MML
csc00230 Purine metabolism SBML MML
csc00240 Pyrimidine metabolism SBML MML
csc00251 (Undocumented) SBML MML
csc00252 (Undocumented) SBML MML
csc00260 Glycine, serine and threonine metabolism SBML MML
csc00271 (Undocumented) SBML MML
csc00272 (Undocumented) SBML MML
csc00280 Valine, leucine and isoleucine degradation SBML MML
csc00281 Geraniol degradation SBML MML
csc00290 Valine, leucine and isoleucine biosynthesis SBML MML
csc00300 Lysine biosynthesis SBML MML
csc00310 Lysine degradation SBML MML
csc00330 Arginine and proline metabolism SBML MML
csc00340 Histidine metabolism SBML MML
csc00350 Tyrosine metabolism SBML MML
csc00360 Phenylalanine metabolism SBML MML
csc00361 gamma-Hexachlorocyclohexane degradation SBML MML
csc00362 (Undocumented) SBML MML
csc00380 Tryptophan metabolism SBML MML
csc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
csc00401 Novobiocin biosynthesis SBML MML
csc00410 beta-Alanine metabolism SBML MML
csc00430 Taurine and hypotaurine metabolism SBML MML
csc00450 Selenoamino acid metabolism SBML MML
csc00460 (Undocumented) SBML MML
csc00471 D-Glutamine and D-glutamate metabolism SBML MML
csc00473 D-Alanine metabolism SBML MML
csc00500 Starch and sucrose metabolism SBML MML
csc00520 Amino sugar and nucleotide sugar metabolism SBML MML
csc00530 (Undocumented) SBML MML
csc00550 Peptidoglycan biosynthesis SBML MML
csc00561 Glycerolipid metabolism SBML MML
csc00564 Glycerophospholipid metabolism SBML MML
csc00600 Sphingolipid metabolism SBML MML
csc00620 Pyruvate metabolism SBML MML
csc00624 1- and 2-Methylnaphthalene degradation SBML MML
csc00625 (Undocumented) SBML MML
csc00630 Glyoxylate and dicarboxylate metabolism SBML MML
csc00632 (Undocumented) SBML MML
csc00640 Propanoate metabolism SBML MML
csc00641 3-Chloroacrylic acid degradation SBML MML
csc00650 Butanoate metabolism SBML MML
csc00670 One carbon pool by folate SBML MML
csc00680 Methane metabolism SBML MML
csc00710 (Undocumented) SBML MML
csc00720 (Undocumented) SBML MML
csc00730 Thiamine metabolism SBML MML
csc00740 Riboflavin metabolism SBML MML
csc00750 Vitamin B6 metabolism SBML MML
csc00760 Nicotinate and nicotinamide metabolism SBML MML
csc00770 Pantothenate and CoA biosynthesis SBML MML
csc00780 Biotin metabolism SBML MML
csc00790 Folate biosynthesis SBML MML
csc00860 Porphyrin and chlorophyll metabolism SBML MML
csc00900 Terpenoid backbone biosynthesis SBML MML
csc00910 Nitrogen metabolism SBML MML
csc00920 Sulfur metabolism SBML MML
csc00960 (Undocumented) SBML MML
csc00970 Aminoacyl-tRNA biosynthesis SBML MML
csc00982 (Undocumented) SBML MML
csc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.