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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cpj: Chlamydophila pneumoniae J138

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cpj00010 Glycolysis / Gluconeogenesis SBML MML
cpj00020 Citrate cycle (TCA cycle) SBML MML
cpj00030 Pentose phosphate pathway SBML MML
cpj00051 Fructose and mannose metabolism SBML MML
cpj00061 Fatty acid biosynthesis SBML MML
cpj00100 (Undocumented) SBML MML
cpj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cpj00230 Purine metabolism SBML MML
cpj00240 Pyrimidine metabolism SBML MML
cpj00251 (Undocumented) SBML MML
cpj00252 (Undocumented) SBML MML
cpj00260 Glycine, serine and threonine metabolism SBML MML
cpj00271 (Undocumented) SBML MML
cpj00272 (Undocumented) SBML MML
cpj00280 Valine, leucine and isoleucine degradation SBML MML
cpj00290 Valine, leucine and isoleucine biosynthesis SBML MML
cpj00300 Lysine biosynthesis SBML MML
cpj00310 Lysine degradation SBML MML
cpj00330 Arginine and proline metabolism SBML MML
cpj00340 Histidine metabolism SBML MML
cpj00350 Tyrosine metabolism SBML MML
cpj00380 Tryptophan metabolism SBML MML
cpj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cpj00450 Selenoamino acid metabolism SBML MML
cpj00471 D-Glutamine and D-glutamate metabolism SBML MML
cpj00500 Starch and sucrose metabolism SBML MML
cpj00530 (Undocumented) SBML MML
cpj00540 Lipopolysaccharide biosynthesis SBML MML
cpj00550 Peptidoglycan biosynthesis SBML MML
cpj00561 Glycerolipid metabolism SBML MML
cpj00564 Glycerophospholipid metabolism SBML MML
cpj00620 Pyruvate metabolism SBML MML
cpj00630 Glyoxylate and dicarboxylate metabolism SBML MML
cpj00632 (Undocumented) SBML MML
cpj00640 Propanoate metabolism SBML MML
cpj00650 Butanoate metabolism SBML MML
cpj00670 One carbon pool by folate SBML MML
cpj00710 (Undocumented) SBML MML
cpj00720 (Undocumented) SBML MML
cpj00730 Thiamine metabolism SBML MML
cpj00740 Riboflavin metabolism SBML MML
cpj00760 Nicotinate and nicotinamide metabolism SBML MML
cpj00770 Pantothenate and CoA biosynthesis SBML MML
cpj00780 Biotin metabolism SBML MML
cpj00785 Lipoic acid metabolism SBML MML
cpj00790 Folate biosynthesis SBML MML
cpj00860 Porphyrin and chlorophyll metabolism SBML MML
cpj00900 Terpenoid backbone biosynthesis SBML MML
cpj00920 Sulfur metabolism SBML MML
cpj00970 Aminoacyl-tRNA biosynthesis SBML MML
cpj00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.