This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cpb: Chlorobium phaeobacteroides BS1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cpb00010 Glycolysis / Gluconeogenesis SBML MML
cpb00020 Citrate cycle (TCA cycle) SBML MML
cpb00030 Pentose phosphate pathway SBML MML
cpb00040 Pentose and glucuronate interconversions SBML MML
cpb00051 Fructose and mannose metabolism SBML MML
cpb00052 Galactose metabolism SBML MML
cpb00061 Fatty acid biosynthesis SBML MML
cpb00071 Fatty acid metabolism SBML MML
cpb00100 (Undocumented) SBML MML
cpb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cpb00220 (Undocumented) SBML MML
cpb00230 Purine metabolism SBML MML
cpb00240 Pyrimidine metabolism SBML MML
cpb00251 (Undocumented) SBML MML
cpb00252 (Undocumented) SBML MML
cpb00260 Glycine, serine and threonine metabolism SBML MML
cpb00271 (Undocumented) SBML MML
cpb00272 (Undocumented) SBML MML
cpb00280 Valine, leucine and isoleucine degradation SBML MML
cpb00290 Valine, leucine and isoleucine biosynthesis SBML MML
cpb00300 Lysine biosynthesis SBML MML
cpb00310 Lysine degradation SBML MML
cpb00330 Arginine and proline metabolism SBML MML
cpb00340 Histidine metabolism SBML MML
cpb00350 Tyrosine metabolism SBML MML
cpb00360 Phenylalanine metabolism SBML MML
cpb00361 gamma-Hexachlorocyclohexane degradation SBML MML
cpb00380 Tryptophan metabolism SBML MML
cpb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cpb00401 Novobiocin biosynthesis SBML MML
cpb00410 beta-Alanine metabolism SBML MML
cpb00450 Selenoamino acid metabolism SBML MML
cpb00460 (Undocumented) SBML MML
cpb00471 D-Glutamine and D-glutamate metabolism SBML MML
cpb00473 D-Alanine metabolism SBML MML
cpb00480 Glutathione metabolism SBML MML
cpb00500 Starch and sucrose metabolism SBML MML
cpb00520 Amino sugar and nucleotide sugar metabolism SBML MML
cpb00521 Streptomycin biosynthesis SBML MML
cpb00523 Polyketide sugar unit biosynthesis SBML MML
cpb00530 (Undocumented) SBML MML
cpb00540 Lipopolysaccharide biosynthesis SBML MML
cpb00550 Peptidoglycan biosynthesis SBML MML
cpb00561 Glycerolipid metabolism SBML MML
cpb00562 Inositol phosphate metabolism SBML MML
cpb00564 Glycerophospholipid metabolism SBML MML
cpb00620 Pyruvate metabolism SBML MML
cpb00624 1- and 2-Methylnaphthalene degradation SBML MML
cpb00630 Glyoxylate and dicarboxylate metabolism SBML MML
cpb00632 (Undocumented) SBML MML
cpb00633 Trinitrotoluene degradation SBML MML
cpb00640 Propanoate metabolism SBML MML
cpb00641 3-Chloroacrylic acid degradation SBML MML
cpb00650 Butanoate metabolism SBML MML
cpb00660 C5-Branched dibasic acid metabolism SBML MML
cpb00670 One carbon pool by folate SBML MML
cpb00680 Methane metabolism SBML MML
cpb00710 (Undocumented) SBML MML
cpb00720 (Undocumented) SBML MML
cpb00730 Thiamine metabolism SBML MML
cpb00740 Riboflavin metabolism SBML MML
cpb00750 Vitamin B6 metabolism SBML MML
cpb00760 Nicotinate and nicotinamide metabolism SBML MML
cpb00770 Pantothenate and CoA biosynthesis SBML MML
cpb00780 Biotin metabolism SBML MML
cpb00790 Folate biosynthesis SBML MML
cpb00860 Porphyrin and chlorophyll metabolism SBML MML
cpb00900 Terpenoid backbone biosynthesis SBML MML
cpb00903 (Undocumented) SBML MML
cpb00906 Carotenoid biosynthesis SBML MML
cpb00910 Nitrogen metabolism SBML MML
cpb00920 Sulfur metabolism SBML MML
cpb00930 Caprolactam degradation SBML MML
cpb00941 (Undocumented) SBML MML
cpb00970 Aminoacyl-tRNA biosynthesis SBML MML
cpb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cpb00982 (Undocumented) SBML MML
cpb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.