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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cno: Clostridium novyi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cno00010 Glycolysis / Gluconeogenesis SBML MML
cno00020 Citrate cycle (TCA cycle) SBML MML
cno00030 Pentose phosphate pathway SBML MML
cno00040 Pentose and glucuronate interconversions SBML MML
cno00051 Fructose and mannose metabolism SBML MML
cno00052 Galactose metabolism SBML MML
cno00061 Fatty acid biosynthesis SBML MML
cno00071 Fatty acid metabolism SBML MML
cno00100 (Undocumented) SBML MML
cno00120 (Undocumented) SBML MML
cno00220 (Undocumented) SBML MML
cno00230 Purine metabolism SBML MML
cno00240 Pyrimidine metabolism SBML MML
cno00251 (Undocumented) SBML MML
cno00252 (Undocumented) SBML MML
cno00260 Glycine, serine and threonine metabolism SBML MML
cno00271 (Undocumented) SBML MML
cno00272 (Undocumented) SBML MML
cno00280 Valine, leucine and isoleucine degradation SBML MML
cno00290 Valine, leucine and isoleucine biosynthesis SBML MML
cno00300 Lysine biosynthesis SBML MML
cno00310 Lysine degradation SBML MML
cno00330 Arginine and proline metabolism SBML MML
cno00340 Histidine metabolism SBML MML
cno00350 Tyrosine metabolism SBML MML
cno00360 Phenylalanine metabolism SBML MML
cno00362 (Undocumented) SBML MML
cno00380 Tryptophan metabolism SBML MML
cno00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cno00401 Novobiocin biosynthesis SBML MML
cno00410 beta-Alanine metabolism SBML MML
cno00430 Taurine and hypotaurine metabolism SBML MML
cno00450 Selenoamino acid metabolism SBML MML
cno00460 (Undocumented) SBML MML
cno00471 D-Glutamine and D-glutamate metabolism SBML MML
cno00473 D-Alanine metabolism SBML MML
cno00480 Glutathione metabolism SBML MML
cno00500 Starch and sucrose metabolism SBML MML
cno00520 Amino sugar and nucleotide sugar metabolism SBML MML
cno00530 (Undocumented) SBML MML
cno00550 Peptidoglycan biosynthesis SBML MML
cno00561 Glycerolipid metabolism SBML MML
cno00564 Glycerophospholipid metabolism SBML MML
cno00565 Ether lipid metabolism SBML MML
cno00590 Arachidonic acid metabolism SBML MML
cno00620 Pyruvate metabolism SBML MML
cno00624 1- and 2-Methylnaphthalene degradation SBML MML
cno00630 Glyoxylate and dicarboxylate metabolism SBML MML
cno00632 (Undocumented) SBML MML
cno00633 Trinitrotoluene degradation SBML MML
cno00640 Propanoate metabolism SBML MML
cno00650 Butanoate metabolism SBML MML
cno00670 One carbon pool by folate SBML MML
cno00680 Methane metabolism SBML MML
cno00710 (Undocumented) SBML MML
cno00720 (Undocumented) SBML MML
cno00730 Thiamine metabolism SBML MML
cno00740 Riboflavin metabolism SBML MML
cno00750 Vitamin B6 metabolism SBML MML
cno00760 Nicotinate and nicotinamide metabolism SBML MML
cno00770 Pantothenate and CoA biosynthesis SBML MML
cno00780 Biotin metabolism SBML MML
cno00790 Folate biosynthesis SBML MML
cno00860 Porphyrin and chlorophyll metabolism SBML MML
cno00900 Terpenoid backbone biosynthesis SBML MML
cno00910 Nitrogen metabolism SBML MML
cno00920 Sulfur metabolism SBML MML
cno00970 Aminoacyl-tRNA biosynthesis SBML MML
cno00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.