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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cne: Cryptococcus neoformans JEC21

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cne00010 Glycolysis / Gluconeogenesis SBML MML
cne00020 Citrate cycle (TCA cycle) SBML MML
cne00030 Pentose phosphate pathway SBML MML
cne00031 (Undocumented) SBML MML
cne00040 Pentose and glucuronate interconversions SBML MML
cne00051 Fructose and mannose metabolism SBML MML
cne00052 Galactose metabolism SBML MML
cne00053 Ascorbate and aldarate metabolism SBML MML
cne00061 Fatty acid biosynthesis SBML MML
cne00062 Fatty acid elongation in mitochondria SBML MML
cne00071 Fatty acid metabolism SBML MML
cne00072 Synthesis and degradation of ketone bodies SBML MML
cne00100 (Undocumented) SBML MML
cne00120 (Undocumented) SBML MML
cne00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cne00150 Androgen and estrogen metabolism SBML MML
cne00220 (Undocumented) SBML MML
cne00230 Purine metabolism SBML MML
cne00240 Pyrimidine metabolism SBML MML
cne00251 (Undocumented) SBML MML
cne00252 (Undocumented) SBML MML
cne00260 Glycine, serine and threonine metabolism SBML MML
cne00271 (Undocumented) SBML MML
cne00272 (Undocumented) SBML MML
cne00280 Valine, leucine and isoleucine degradation SBML MML
cne00281 Geraniol degradation SBML MML
cne00290 Valine, leucine and isoleucine biosynthesis SBML MML
cne00300 Lysine biosynthesis SBML MML
cne00310 Lysine degradation SBML MML
cne00330 Arginine and proline metabolism SBML MML
cne00340 Histidine metabolism SBML MML
cne00350 Tyrosine metabolism SBML MML
cne00360 Phenylalanine metabolism SBML MML
cne00361 gamma-Hexachlorocyclohexane degradation SBML MML
cne00362 (Undocumented) SBML MML
cne00364 Fluorobenzoate degradation SBML MML
cne00380 Tryptophan metabolism SBML MML
cne00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cne00401 Novobiocin biosynthesis SBML MML
cne00410 beta-Alanine metabolism SBML MML
cne00430 Taurine and hypotaurine metabolism SBML MML
cne00440 Phosphonate and phosphinate metabolism SBML MML
cne00450 Selenoamino acid metabolism SBML MML
cne00460 (Undocumented) SBML MML
cne00480 Glutathione metabolism SBML MML
cne00500 Starch and sucrose metabolism SBML MML
cne00510 (Undocumented) SBML MML
cne00520 Amino sugar and nucleotide sugar metabolism SBML MML
cne00521 Streptomycin biosynthesis SBML MML
cne00530 (Undocumented) SBML MML
cne00550 Peptidoglycan biosynthesis SBML MML
cne00561 Glycerolipid metabolism SBML MML
cne00562 Inositol phosphate metabolism SBML MML
cne00564 Glycerophospholipid metabolism SBML MML
cne00565 Ether lipid metabolism SBML MML
cne00590 Arachidonic acid metabolism SBML MML
cne00592 alpha-Linolenic acid metabolism SBML MML
cne00600 Sphingolipid metabolism SBML MML
cne00620 Pyruvate metabolism SBML MML
cne00624 1- and 2-Methylnaphthalene degradation SBML MML
cne00626 Naphthalene and anthracene degradation SBML MML
cne00627 1,4-Dichlorobenzene degradation SBML MML
cne00630 Glyoxylate and dicarboxylate metabolism SBML MML
cne00632 (Undocumented) SBML MML
cne00640 Propanoate metabolism SBML MML
cne00641 3-Chloroacrylic acid degradation SBML MML
cne00642 Ethylbenzene degradation SBML MML
cne00650 Butanoate metabolism SBML MML
cne00660 C5-Branched dibasic acid metabolism SBML MML
cne00670 One carbon pool by folate SBML MML
cne00680 Methane metabolism SBML MML
cne00710 (Undocumented) SBML MML
cne00720 (Undocumented) SBML MML
cne00730 Thiamine metabolism SBML MML
cne00740 Riboflavin metabolism SBML MML
cne00750 Vitamin B6 metabolism SBML MML
cne00760 Nicotinate and nicotinamide metabolism SBML MML
cne00770 Pantothenate and CoA biosynthesis SBML MML
cne00780 Biotin metabolism SBML MML
cne00785 Lipoic acid metabolism SBML MML
cne00790 Folate biosynthesis SBML MML
cne00860 Porphyrin and chlorophyll metabolism SBML MML
cne00900 Terpenoid backbone biosynthesis SBML MML
cne00903 (Undocumented) SBML MML
cne00910 Nitrogen metabolism SBML MML
cne00920 Sulfur metabolism SBML MML
cne00930 Caprolactam degradation SBML MML
cne00940 (Undocumented) SBML MML
cne00950 (Undocumented) SBML MML
cne00960 (Undocumented) SBML MML
cne00970 Aminoacyl-tRNA biosynthesis SBML MML
cne00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cne00982 (Undocumented) SBML MML
cne00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.