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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cmu: Chlamydia muridarum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cmu00010 Glycolysis / Gluconeogenesis SBML MML
cmu00020 Citrate cycle (TCA cycle) SBML MML
cmu00030 Pentose phosphate pathway SBML MML
cmu00051 Fructose and mannose metabolism SBML MML
cmu00061 Fatty acid biosynthesis SBML MML
cmu00100 (Undocumented) SBML MML
cmu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cmu00230 Purine metabolism SBML MML
cmu00240 Pyrimidine metabolism SBML MML
cmu00251 (Undocumented) SBML MML
cmu00252 (Undocumented) SBML MML
cmu00260 Glycine, serine and threonine metabolism SBML MML
cmu00271 (Undocumented) SBML MML
cmu00272 (Undocumented) SBML MML
cmu00280 Valine, leucine and isoleucine degradation SBML MML
cmu00290 Valine, leucine and isoleucine biosynthesis SBML MML
cmu00300 Lysine biosynthesis SBML MML
cmu00310 Lysine degradation SBML MML
cmu00330 Arginine and proline metabolism SBML MML
cmu00380 Tryptophan metabolism SBML MML
cmu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cmu00450 Selenoamino acid metabolism SBML MML
cmu00471 D-Glutamine and D-glutamate metabolism SBML MML
cmu00500 Starch and sucrose metabolism SBML MML
cmu00530 (Undocumented) SBML MML
cmu00540 Lipopolysaccharide biosynthesis SBML MML
cmu00550 Peptidoglycan biosynthesis SBML MML
cmu00561 Glycerolipid metabolism SBML MML
cmu00564 Glycerophospholipid metabolism SBML MML
cmu00620 Pyruvate metabolism SBML MML
cmu00630 Glyoxylate and dicarboxylate metabolism SBML MML
cmu00632 (Undocumented) SBML MML
cmu00640 Propanoate metabolism SBML MML
cmu00650 Butanoate metabolism SBML MML
cmu00670 One carbon pool by folate SBML MML
cmu00710 (Undocumented) SBML MML
cmu00720 (Undocumented) SBML MML
cmu00730 Thiamine metabolism SBML MML
cmu00740 Riboflavin metabolism SBML MML
cmu00760 Nicotinate and nicotinamide metabolism SBML MML
cmu00770 Pantothenate and CoA biosynthesis SBML MML
cmu00780 Biotin metabolism SBML MML
cmu00785 Lipoic acid metabolism SBML MML
cmu00790 Folate biosynthesis SBML MML
cmu00860 Porphyrin and chlorophyll metabolism SBML MML
cmu00900 Terpenoid backbone biosynthesis SBML MML
cmu00920 Sulfur metabolism SBML MML
cmu00970 Aminoacyl-tRNA biosynthesis SBML MML
cmu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.