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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cme: Cyanidioschyzon merolae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cme00010 Glycolysis / Gluconeogenesis SBML MML
cme00020 Citrate cycle (TCA cycle) SBML MML
cme00030 Pentose phosphate pathway SBML MML
cme00031 (Undocumented) SBML MML
cme00040 Pentose and glucuronate interconversions SBML MML
cme00051 Fructose and mannose metabolism SBML MML
cme00052 Galactose metabolism SBML MML
cme00053 Ascorbate and aldarate metabolism SBML MML
cme00061 Fatty acid biosynthesis SBML MML
cme00071 Fatty acid metabolism SBML MML
cme00072 Synthesis and degradation of ketone bodies SBML MML
cme00100 (Undocumented) SBML MML
cme00120 (Undocumented) SBML MML
cme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cme00220 (Undocumented) SBML MML
cme00230 Purine metabolism SBML MML
cme00240 Pyrimidine metabolism SBML MML
cme00251 (Undocumented) SBML MML
cme00252 (Undocumented) SBML MML
cme00260 Glycine, serine and threonine metabolism SBML MML
cme00271 (Undocumented) SBML MML
cme00272 (Undocumented) SBML MML
cme00280 Valine, leucine and isoleucine degradation SBML MML
cme00281 Geraniol degradation SBML MML
cme00290 Valine, leucine and isoleucine biosynthesis SBML MML
cme00300 Lysine biosynthesis SBML MML
cme00310 Lysine degradation SBML MML
cme00330 Arginine and proline metabolism SBML MML
cme00340 Histidine metabolism SBML MML
cme00350 Tyrosine metabolism SBML MML
cme00360 Phenylalanine metabolism SBML MML
cme00361 gamma-Hexachlorocyclohexane degradation SBML MML
cme00380 Tryptophan metabolism SBML MML
cme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cme00401 Novobiocin biosynthesis SBML MML
cme00410 beta-Alanine metabolism SBML MML
cme00430 Taurine and hypotaurine metabolism SBML MML
cme00440 Phosphonate and phosphinate metabolism SBML MML
cme00450 Selenoamino acid metabolism SBML MML
cme00460 (Undocumented) SBML MML
cme00480 Glutathione metabolism SBML MML
cme00500 Starch and sucrose metabolism SBML MML
cme00510 (Undocumented) SBML MML
cme00520 Amino sugar and nucleotide sugar metabolism SBML MML
cme00521 Streptomycin biosynthesis SBML MML
cme00530 (Undocumented) SBML MML
cme00550 Peptidoglycan biosynthesis SBML MML
cme00561 Glycerolipid metabolism SBML MML
cme00562 Inositol phosphate metabolism SBML MML
cme00564 Glycerophospholipid metabolism SBML MML
cme00565 Ether lipid metabolism SBML MML
cme00592 alpha-Linolenic acid metabolism SBML MML
cme00600 Sphingolipid metabolism SBML MML
cme00620 Pyruvate metabolism SBML MML
cme00624 1- and 2-Methylnaphthalene degradation SBML MML
cme00626 Naphthalene and anthracene degradation SBML MML
cme00630 Glyoxylate and dicarboxylate metabolism SBML MML
cme00632 (Undocumented) SBML MML
cme00640 Propanoate metabolism SBML MML
cme00641 3-Chloroacrylic acid degradation SBML MML
cme00650 Butanoate metabolism SBML MML
cme00670 One carbon pool by folate SBML MML
cme00680 Methane metabolism SBML MML
cme00710 (Undocumented) SBML MML
cme00720 (Undocumented) SBML MML
cme00730 Thiamine metabolism SBML MML
cme00740 Riboflavin metabolism SBML MML
cme00750 Vitamin B6 metabolism SBML MML
cme00760 Nicotinate and nicotinamide metabolism SBML MML
cme00770 Pantothenate and CoA biosynthesis SBML MML
cme00780 Biotin metabolism SBML MML
cme00785 Lipoic acid metabolism SBML MML
cme00790 Folate biosynthesis SBML MML
cme00860 Porphyrin and chlorophyll metabolism SBML MML
cme00900 Terpenoid backbone biosynthesis SBML MML
cme00903 (Undocumented) SBML MML
cme00906 Carotenoid biosynthesis SBML MML
cme00910 Nitrogen metabolism SBML MML
cme00920 Sulfur metabolism SBML MML
cme00930 Caprolactam degradation SBML MML
cme00940 (Undocumented) SBML MML
cme00950 (Undocumented) SBML MML
cme00960 (Undocumented) SBML MML
cme00970 Aminoacyl-tRNA biosynthesis SBML MML
cme00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cme00982 (Undocumented) SBML MML
cme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.