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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cko: Citrobacter koseri ATCC BAA-895

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cko00010 Glycolysis / Gluconeogenesis SBML MML
cko00020 Citrate cycle (TCA cycle) SBML MML
cko00030 Pentose phosphate pathway SBML MML
cko00031 (Undocumented) SBML MML
cko00040 Pentose and glucuronate interconversions SBML MML
cko00051 Fructose and mannose metabolism SBML MML
cko00052 Galactose metabolism SBML MML
cko00053 Ascorbate and aldarate metabolism SBML MML
cko00061 Fatty acid biosynthesis SBML MML
cko00071 Fatty acid metabolism SBML MML
cko00100 (Undocumented) SBML MML
cko00120 (Undocumented) SBML MML
cko00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cko00220 (Undocumented) SBML MML
cko00230 Purine metabolism SBML MML
cko00240 Pyrimidine metabolism SBML MML
cko00251 (Undocumented) SBML MML
cko00252 (Undocumented) SBML MML
cko00260 Glycine, serine and threonine metabolism SBML MML
cko00271 (Undocumented) SBML MML
cko00272 (Undocumented) SBML MML
cko00280 Valine, leucine and isoleucine degradation SBML MML
cko00281 Geraniol degradation SBML MML
cko00290 Valine, leucine and isoleucine biosynthesis SBML MML
cko00300 Lysine biosynthesis SBML MML
cko00310 Lysine degradation SBML MML
cko00330 Arginine and proline metabolism SBML MML
cko00340 Histidine metabolism SBML MML
cko00350 Tyrosine metabolism SBML MML
cko00360 Phenylalanine metabolism SBML MML
cko00361 gamma-Hexachlorocyclohexane degradation SBML MML
cko00362 (Undocumented) SBML MML
cko00363 Bisphenol A degradation SBML MML
cko00364 Fluorobenzoate degradation SBML MML
cko00380 Tryptophan metabolism SBML MML
cko00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cko00401 Novobiocin biosynthesis SBML MML
cko00410 beta-Alanine metabolism SBML MML
cko00430 Taurine and hypotaurine metabolism SBML MML
cko00450 Selenoamino acid metabolism SBML MML
cko00460 (Undocumented) SBML MML
cko00471 D-Glutamine and D-glutamate metabolism SBML MML
cko00473 D-Alanine metabolism SBML MML
cko00480 Glutathione metabolism SBML MML
cko00500 Starch and sucrose metabolism SBML MML
cko00520 Amino sugar and nucleotide sugar metabolism SBML MML
cko00521 Streptomycin biosynthesis SBML MML
cko00523 Polyketide sugar unit biosynthesis SBML MML
cko00530 (Undocumented) SBML MML
cko00540 Lipopolysaccharide biosynthesis SBML MML
cko00550 Peptidoglycan biosynthesis SBML MML
cko00561 Glycerolipid metabolism SBML MML
cko00562 Inositol phosphate metabolism SBML MML
cko00564 Glycerophospholipid metabolism SBML MML
cko00590 Arachidonic acid metabolism SBML MML
cko00592 alpha-Linolenic acid metabolism SBML MML
cko00600 Sphingolipid metabolism SBML MML
cko00620 Pyruvate metabolism SBML MML
cko00624 1- and 2-Methylnaphthalene degradation SBML MML
cko00626 Naphthalene and anthracene degradation SBML MML
cko00627 1,4-Dichlorobenzene degradation SBML MML
cko00630 Glyoxylate and dicarboxylate metabolism SBML MML
cko00632 (Undocumented) SBML MML
cko00633 Trinitrotoluene degradation SBML MML
cko00640 Propanoate metabolism SBML MML
cko00641 3-Chloroacrylic acid degradation SBML MML
cko00642 Ethylbenzene degradation SBML MML
cko00643 Styrene degradation SBML MML
cko00650 Butanoate metabolism SBML MML
cko00660 C5-Branched dibasic acid metabolism SBML MML
cko00670 One carbon pool by folate SBML MML
cko00680 Methane metabolism SBML MML
cko00710 (Undocumented) SBML MML
cko00720 (Undocumented) SBML MML
cko00730 Thiamine metabolism SBML MML
cko00740 Riboflavin metabolism SBML MML
cko00750 Vitamin B6 metabolism SBML MML
cko00760 Nicotinate and nicotinamide metabolism SBML MML
cko00770 Pantothenate and CoA biosynthesis SBML MML
cko00780 Biotin metabolism SBML MML
cko00790 Folate biosynthesis SBML MML
cko00791 Atrazine degradation SBML MML
cko00860 Porphyrin and chlorophyll metabolism SBML MML
cko00900 Terpenoid backbone biosynthesis SBML MML
cko00903 (Undocumented) SBML MML
cko00910 Nitrogen metabolism SBML MML
cko00920 Sulfur metabolism SBML MML
cko00930 Caprolactam degradation SBML MML
cko00950 (Undocumented) SBML MML
cko00960 (Undocumented) SBML MML
cko00970 Aminoacyl-tRNA biosynthesis SBML MML
cko00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cko00982 (Undocumented) SBML MML
cko00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.