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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism chy: Carboxydothermus hydrogenoformans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
chy00010 Glycolysis / Gluconeogenesis SBML MML
chy00020 Citrate cycle (TCA cycle) SBML MML
chy00030 Pentose phosphate pathway SBML MML
chy00040 Pentose and glucuronate interconversions SBML MML
chy00051 Fructose and mannose metabolism SBML MML
chy00052 Galactose metabolism SBML MML
chy00061 Fatty acid biosynthesis SBML MML
chy00062 Fatty acid elongation in mitochondria SBML MML
chy00071 Fatty acid metabolism SBML MML
chy00100 (Undocumented) SBML MML
chy00120 (Undocumented) SBML MML
chy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
chy00220 (Undocumented) SBML MML
chy00230 Purine metabolism SBML MML
chy00240 Pyrimidine metabolism SBML MML
chy00251 (Undocumented) SBML MML
chy00252 (Undocumented) SBML MML
chy00260 Glycine, serine and threonine metabolism SBML MML
chy00271 (Undocumented) SBML MML
chy00272 (Undocumented) SBML MML
chy00280 Valine, leucine and isoleucine degradation SBML MML
chy00281 Geraniol degradation SBML MML
chy00290 Valine, leucine and isoleucine biosynthesis SBML MML
chy00300 Lysine biosynthesis SBML MML
chy00310 Lysine degradation SBML MML
chy00330 Arginine and proline metabolism SBML MML
chy00340 Histidine metabolism SBML MML
chy00350 Tyrosine metabolism SBML MML
chy00360 Phenylalanine metabolism SBML MML
chy00362 (Undocumented) SBML MML
chy00380 Tryptophan metabolism SBML MML
chy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
chy00401 Novobiocin biosynthesis SBML MML
chy00410 beta-Alanine metabolism SBML MML
chy00430 Taurine and hypotaurine metabolism SBML MML
chy00450 Selenoamino acid metabolism SBML MML
chy00460 (Undocumented) SBML MML
chy00471 D-Glutamine and D-glutamate metabolism SBML MML
chy00473 D-Alanine metabolism SBML MML
chy00500 Starch and sucrose metabolism SBML MML
chy00520 Amino sugar and nucleotide sugar metabolism SBML MML
chy00521 Streptomycin biosynthesis SBML MML
chy00523 Polyketide sugar unit biosynthesis SBML MML
chy00530 (Undocumented) SBML MML
chy00550 Peptidoglycan biosynthesis SBML MML
chy00561 Glycerolipid metabolism SBML MML
chy00564 Glycerophospholipid metabolism SBML MML
chy00592 alpha-Linolenic acid metabolism SBML MML
chy00620 Pyruvate metabolism SBML MML
chy00624 1- and 2-Methylnaphthalene degradation SBML MML
chy00628 Fluorene degradation SBML MML
chy00630 Glyoxylate and dicarboxylate metabolism SBML MML
chy00632 (Undocumented) SBML MML
chy00633 Trinitrotoluene degradation SBML MML
chy00640 Propanoate metabolism SBML MML
chy00641 3-Chloroacrylic acid degradation SBML MML
chy00642 Ethylbenzene degradation SBML MML
chy00650 Butanoate metabolism SBML MML
chy00660 C5-Branched dibasic acid metabolism SBML MML
chy00670 One carbon pool by folate SBML MML
chy00680 Methane metabolism SBML MML
chy00710 (Undocumented) SBML MML
chy00720 (Undocumented) SBML MML
chy00730 Thiamine metabolism SBML MML
chy00740 Riboflavin metabolism SBML MML
chy00750 Vitamin B6 metabolism SBML MML
chy00760 Nicotinate and nicotinamide metabolism SBML MML
chy00770 Pantothenate and CoA biosynthesis SBML MML
chy00780 Biotin metabolism SBML MML
chy00785 Lipoic acid metabolism SBML MML
chy00790 Folate biosynthesis SBML MML
chy00860 Porphyrin and chlorophyll metabolism SBML MML
chy00900 Terpenoid backbone biosynthesis SBML MML
chy00903 (Undocumented) SBML MML
chy00910 Nitrogen metabolism SBML MML
chy00920 Sulfur metabolism SBML MML
chy00930 Caprolactam degradation SBML MML
chy00960 (Undocumented) SBML MML
chy00970 Aminoacyl-tRNA biosynthesis SBML MML
chy00982 (Undocumented) SBML MML
chy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.