This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism chu: Cytophaga hutchinsonii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
chu00010 Glycolysis / Gluconeogenesis SBML MML
chu00020 Citrate cycle (TCA cycle) SBML MML
chu00030 Pentose phosphate pathway SBML MML
chu00031 (Undocumented) SBML MML
chu00040 Pentose and glucuronate interconversions SBML MML
chu00051 Fructose and mannose metabolism SBML MML
chu00052 Galactose metabolism SBML MML
chu00053 Ascorbate and aldarate metabolism SBML MML
chu00061 Fatty acid biosynthesis SBML MML
chu00062 Fatty acid elongation in mitochondria SBML MML
chu00071 Fatty acid metabolism SBML MML
chu00072 Synthesis and degradation of ketone bodies SBML MML
chu00100 (Undocumented) SBML MML
chu00120 (Undocumented) SBML MML
chu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
chu00220 (Undocumented) SBML MML
chu00230 Purine metabolism SBML MML
chu00240 Pyrimidine metabolism SBML MML
chu00251 (Undocumented) SBML MML
chu00252 (Undocumented) SBML MML
chu00260 Glycine, serine and threonine metabolism SBML MML
chu00271 (Undocumented) SBML MML
chu00272 (Undocumented) SBML MML
chu00280 Valine, leucine and isoleucine degradation SBML MML
chu00281 Geraniol degradation SBML MML
chu00290 Valine, leucine and isoleucine biosynthesis SBML MML
chu00300 Lysine biosynthesis SBML MML
chu00310 Lysine degradation SBML MML
chu00330 Arginine and proline metabolism SBML MML
chu00340 Histidine metabolism SBML MML
chu00350 Tyrosine metabolism SBML MML
chu00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
chu00360 Phenylalanine metabolism SBML MML
chu00361 gamma-Hexachlorocyclohexane degradation SBML MML
chu00362 (Undocumented) SBML MML
chu00363 Bisphenol A degradation SBML MML
chu00380 Tryptophan metabolism SBML MML
chu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
chu00401 Novobiocin biosynthesis SBML MML
chu00410 beta-Alanine metabolism SBML MML
chu00450 Selenoamino acid metabolism SBML MML
chu00460 (Undocumented) SBML MML
chu00471 D-Glutamine and D-glutamate metabolism SBML MML
chu00473 D-Alanine metabolism SBML MML
chu00480 Glutathione metabolism SBML MML
chu00500 Starch and sucrose metabolism SBML MML
chu00510 (Undocumented) SBML MML
chu00520 Amino sugar and nucleotide sugar metabolism SBML MML
chu00521 Streptomycin biosynthesis SBML MML
chu00523 Polyketide sugar unit biosynthesis SBML MML
chu00530 (Undocumented) SBML MML
chu00540 Lipopolysaccharide biosynthesis SBML MML
chu00550 Peptidoglycan biosynthesis SBML MML
chu00561 Glycerolipid metabolism SBML MML
chu00562 Inositol phosphate metabolism SBML MML
chu00564 Glycerophospholipid metabolism SBML MML
chu00590 Arachidonic acid metabolism SBML MML
chu00591 Linoleic acid metabolism SBML MML
chu00592 alpha-Linolenic acid metabolism SBML MML
chu00620 Pyruvate metabolism SBML MML
chu00624 1- and 2-Methylnaphthalene degradation SBML MML
chu00626 Naphthalene and anthracene degradation SBML MML
chu00627 1,4-Dichlorobenzene degradation SBML MML
chu00628 Fluorene degradation SBML MML
chu00630 Glyoxylate and dicarboxylate metabolism SBML MML
chu00632 (Undocumented) SBML MML
chu00640 Propanoate metabolism SBML MML
chu00641 3-Chloroacrylic acid degradation SBML MML
chu00642 Ethylbenzene degradation SBML MML
chu00650 Butanoate metabolism SBML MML
chu00660 C5-Branched dibasic acid metabolism SBML MML
chu00670 One carbon pool by folate SBML MML
chu00680 Methane metabolism SBML MML
chu00710 (Undocumented) SBML MML
chu00720 (Undocumented) SBML MML
chu00730 Thiamine metabolism SBML MML
chu00740 Riboflavin metabolism SBML MML
chu00750 Vitamin B6 metabolism SBML MML
chu00760 Nicotinate and nicotinamide metabolism SBML MML
chu00770 Pantothenate and CoA biosynthesis SBML MML
chu00780 Biotin metabolism SBML MML
chu00785 Lipoic acid metabolism SBML MML
chu00790 Folate biosynthesis SBML MML
chu00860 Porphyrin and chlorophyll metabolism SBML MML
chu00900 Terpenoid backbone biosynthesis SBML MML
chu00903 (Undocumented) SBML MML
chu00906 Carotenoid biosynthesis SBML MML
chu00910 Nitrogen metabolism SBML MML
chu00920 Sulfur metabolism SBML MML
chu00930 Caprolactam degradation SBML MML
chu00940 (Undocumented) SBML MML
chu00941 (Undocumented) SBML MML
chu00950 (Undocumented) SBML MML
chu00960 (Undocumented) SBML MML
chu00970 Aminoacyl-tRNA biosynthesis SBML MML
chu00982 (Undocumented) SBML MML
chu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.