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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cgl: Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cgl00010 Glycolysis / Gluconeogenesis SBML MML
cgl00020 Citrate cycle (TCA cycle) SBML MML
cgl00030 Pentose phosphate pathway SBML MML
cgl00031 (Undocumented) SBML MML
cgl00040 Pentose and glucuronate interconversions SBML MML
cgl00051 Fructose and mannose metabolism SBML MML
cgl00052 Galactose metabolism SBML MML
cgl00053 Ascorbate and aldarate metabolism SBML MML
cgl00061 Fatty acid biosynthesis SBML MML
cgl00071 Fatty acid metabolism SBML MML
cgl00072 Synthesis and degradation of ketone bodies SBML MML
cgl00100 (Undocumented) SBML MML
cgl00120 (Undocumented) SBML MML
cgl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cgl00150 Androgen and estrogen metabolism SBML MML
cgl00220 (Undocumented) SBML MML
cgl00230 Purine metabolism SBML MML
cgl00240 Pyrimidine metabolism SBML MML
cgl00251 (Undocumented) SBML MML
cgl00252 (Undocumented) SBML MML
cgl00260 Glycine, serine and threonine metabolism SBML MML
cgl00271 (Undocumented) SBML MML
cgl00272 (Undocumented) SBML MML
cgl00280 Valine, leucine and isoleucine degradation SBML MML
cgl00281 Geraniol degradation SBML MML
cgl00290 Valine, leucine and isoleucine biosynthesis SBML MML
cgl00300 Lysine biosynthesis SBML MML
cgl00310 Lysine degradation SBML MML
cgl00330 Arginine and proline metabolism SBML MML
cgl00340 Histidine metabolism SBML MML
cgl00350 Tyrosine metabolism SBML MML
cgl00360 Phenylalanine metabolism SBML MML
cgl00361 gamma-Hexachlorocyclohexane degradation SBML MML
cgl00362 (Undocumented) SBML MML
cgl00363 Bisphenol A degradation SBML MML
cgl00364 Fluorobenzoate degradation SBML MML
cgl00380 Tryptophan metabolism SBML MML
cgl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cgl00401 Novobiocin biosynthesis SBML MML
cgl00410 beta-Alanine metabolism SBML MML
cgl00430 Taurine and hypotaurine metabolism SBML MML
cgl00450 Selenoamino acid metabolism SBML MML
cgl00460 (Undocumented) SBML MML
cgl00471 D-Glutamine and D-glutamate metabolism SBML MML
cgl00473 D-Alanine metabolism SBML MML
cgl00480 Glutathione metabolism SBML MML
cgl00500 Starch and sucrose metabolism SBML MML
cgl00510 (Undocumented) SBML MML
cgl00520 Amino sugar and nucleotide sugar metabolism SBML MML
cgl00521 Streptomycin biosynthesis SBML MML
cgl00523 Polyketide sugar unit biosynthesis SBML MML
cgl00530 (Undocumented) SBML MML
cgl00550 Peptidoglycan biosynthesis SBML MML
cgl00561 Glycerolipid metabolism SBML MML
cgl00562 Inositol phosphate metabolism SBML MML
cgl00564 Glycerophospholipid metabolism SBML MML
cgl00590 Arachidonic acid metabolism SBML MML
cgl00600 Sphingolipid metabolism SBML MML
cgl00620 Pyruvate metabolism SBML MML
cgl00622 Toluene and xylene degradation SBML MML
cgl00623 2,4-Dichlorobenzoate degradation SBML MML
cgl00624 1- and 2-Methylnaphthalene degradation SBML MML
cgl00626 Naphthalene and anthracene degradation SBML MML
cgl00627 1,4-Dichlorobenzene degradation SBML MML
cgl00628 Fluorene degradation SBML MML
cgl00630 Glyoxylate and dicarboxylate metabolism SBML MML
cgl00632 (Undocumented) SBML MML
cgl00640 Propanoate metabolism SBML MML
cgl00641 3-Chloroacrylic acid degradation SBML MML
cgl00650 Butanoate metabolism SBML MML
cgl00660 C5-Branched dibasic acid metabolism SBML MML
cgl00670 One carbon pool by folate SBML MML
cgl00680 Methane metabolism SBML MML
cgl00710 (Undocumented) SBML MML
cgl00720 (Undocumented) SBML MML
cgl00730 Thiamine metabolism SBML MML
cgl00740 Riboflavin metabolism SBML MML
cgl00750 Vitamin B6 metabolism SBML MML
cgl00760 Nicotinate and nicotinamide metabolism SBML MML
cgl00770 Pantothenate and CoA biosynthesis SBML MML
cgl00780 Biotin metabolism SBML MML
cgl00785 Lipoic acid metabolism SBML MML
cgl00790 Folate biosynthesis SBML MML
cgl00860 Porphyrin and chlorophyll metabolism SBML MML
cgl00900 Terpenoid backbone biosynthesis SBML MML
cgl00903 (Undocumented) SBML MML
cgl00910 Nitrogen metabolism SBML MML
cgl00920 Sulfur metabolism SBML MML
cgl00930 Caprolactam degradation SBML MML
cgl00940 (Undocumented) SBML MML
cgl00950 (Undocumented) SBML MML
cgl00960 (Undocumented) SBML MML
cgl00970 Aminoacyl-tRNA biosynthesis SBML MML
cgl00982 (Undocumented) SBML MML
cgl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.