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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cel: Caenorhabditis elegans (nematode)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cel00010 Glycolysis / Gluconeogenesis SBML MML
cel00020 Citrate cycle (TCA cycle) SBML MML
cel00030 Pentose phosphate pathway SBML MML
cel00031 (Undocumented) SBML MML
cel00040 Pentose and glucuronate interconversions SBML MML
cel00051 Fructose and mannose metabolism SBML MML
cel00052 Galactose metabolism SBML MML
cel00053 Ascorbate and aldarate metabolism SBML MML
cel00061 Fatty acid biosynthesis SBML MML
cel00062 Fatty acid elongation in mitochondria SBML MML
cel00071 Fatty acid metabolism SBML MML
cel00072 Synthesis and degradation of ketone bodies SBML MML
cel00100 (Undocumented) SBML MML
cel00120 (Undocumented) SBML MML
cel00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cel00150 Androgen and estrogen metabolism SBML MML
cel00220 (Undocumented) SBML MML
cel00230 Purine metabolism SBML MML
cel00232 Caffeine metabolism SBML MML
cel00240 Pyrimidine metabolism SBML MML
cel00251 (Undocumented) SBML MML
cel00252 (Undocumented) SBML MML
cel00260 Glycine, serine and threonine metabolism SBML MML
cel00271 (Undocumented) SBML MML
cel00272 (Undocumented) SBML MML
cel00280 Valine, leucine and isoleucine degradation SBML MML
cel00281 Geraniol degradation SBML MML
cel00290 Valine, leucine and isoleucine biosynthesis SBML MML
cel00310 Lysine degradation SBML MML
cel00330 Arginine and proline metabolism SBML MML
cel00340 Histidine metabolism SBML MML
cel00350 Tyrosine metabolism SBML MML
cel00360 Phenylalanine metabolism SBML MML
cel00361 gamma-Hexachlorocyclohexane degradation SBML MML
cel00363 Bisphenol A degradation SBML MML
cel00380 Tryptophan metabolism SBML MML
cel00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cel00401 Novobiocin biosynthesis SBML MML
cel00410 beta-Alanine metabolism SBML MML
cel00430 Taurine and hypotaurine metabolism SBML MML
cel00440 Phosphonate and phosphinate metabolism SBML MML
cel00450 Selenoamino acid metabolism SBML MML
cel00460 (Undocumented) SBML MML
cel00471 D-Glutamine and D-glutamate metabolism SBML MML
cel00472 D-Arginine and D-ornithine metabolism SBML MML
cel00480 Glutathione metabolism SBML MML
cel00500 Starch and sucrose metabolism SBML MML
cel00510 (Undocumented) SBML MML
cel00520 Amino sugar and nucleotide sugar metabolism SBML MML
cel00521 Streptomycin biosynthesis SBML MML
cel00523 Polyketide sugar unit biosynthesis SBML MML
cel00530 (Undocumented) SBML MML
cel00550 Peptidoglycan biosynthesis SBML MML
cel00561 Glycerolipid metabolism SBML MML
cel00562 Inositol phosphate metabolism SBML MML
cel00564 Glycerophospholipid metabolism SBML MML
cel00565 Ether lipid metabolism SBML MML
cel00590 Arachidonic acid metabolism SBML MML
cel00591 Linoleic acid metabolism SBML MML
cel00592 alpha-Linolenic acid metabolism SBML MML
cel00600 Sphingolipid metabolism SBML MML
cel00620 Pyruvate metabolism SBML MML
cel00624 1- and 2-Methylnaphthalene degradation SBML MML
cel00626 Naphthalene and anthracene degradation SBML MML
cel00630 Glyoxylate and dicarboxylate metabolism SBML MML
cel00632 (Undocumented) SBML MML
cel00640 Propanoate metabolism SBML MML
cel00641 3-Chloroacrylic acid degradation SBML MML
cel00643 Styrene degradation SBML MML
cel00650 Butanoate metabolism SBML MML
cel00660 C5-Branched dibasic acid metabolism SBML MML
cel00670 One carbon pool by folate SBML MML
cel00680 Methane metabolism SBML MML
cel00710 (Undocumented) SBML MML
cel00720 (Undocumented) SBML MML
cel00730 Thiamine metabolism SBML MML
cel00740 Riboflavin metabolism SBML MML
cel00750 Vitamin B6 metabolism SBML MML
cel00760 Nicotinate and nicotinamide metabolism SBML MML
cel00770 Pantothenate and CoA biosynthesis SBML MML
cel00785 Lipoic acid metabolism SBML MML
cel00790 Folate biosynthesis SBML MML
cel00791 Atrazine degradation SBML MML
cel00860 Porphyrin and chlorophyll metabolism SBML MML
cel00900 Terpenoid backbone biosynthesis SBML MML
cel00903 (Undocumented) SBML MML
cel00910 Nitrogen metabolism SBML MML
cel00920 Sulfur metabolism SBML MML
cel00930 Caprolactam degradation SBML MML
cel00940 (Undocumented) SBML MML
cel00950 (Undocumented) SBML MML
cel00960 (Undocumented) SBML MML
cel00970 Aminoacyl-tRNA biosynthesis SBML MML
cel00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cel00982 (Undocumented) SBML MML
cel00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.