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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cbf: Clostridium botulinum F Langeland

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cbf00010 Glycolysis / Gluconeogenesis SBML MML
cbf00020 Citrate cycle (TCA cycle) SBML MML
cbf00030 Pentose phosphate pathway SBML MML
cbf00040 Pentose and glucuronate interconversions SBML MML
cbf00051 Fructose and mannose metabolism SBML MML
cbf00052 Galactose metabolism SBML MML
cbf00053 Ascorbate and aldarate metabolism SBML MML
cbf00061 Fatty acid biosynthesis SBML MML
cbf00071 Fatty acid metabolism SBML MML
cbf00100 (Undocumented) SBML MML
cbf00120 (Undocumented) SBML MML
cbf00220 (Undocumented) SBML MML
cbf00230 Purine metabolism SBML MML
cbf00240 Pyrimidine metabolism SBML MML
cbf00251 (Undocumented) SBML MML
cbf00252 (Undocumented) SBML MML
cbf00260 Glycine, serine and threonine metabolism SBML MML
cbf00271 (Undocumented) SBML MML
cbf00272 (Undocumented) SBML MML
cbf00280 Valine, leucine and isoleucine degradation SBML MML
cbf00290 Valine, leucine and isoleucine biosynthesis SBML MML
cbf00300 Lysine biosynthesis SBML MML
cbf00310 Lysine degradation SBML MML
cbf00330 Arginine and proline metabolism SBML MML
cbf00340 Histidine metabolism SBML MML
cbf00350 Tyrosine metabolism SBML MML
cbf00360 Phenylalanine metabolism SBML MML
cbf00362 (Undocumented) SBML MML
cbf00380 Tryptophan metabolism SBML MML
cbf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cbf00401 Novobiocin biosynthesis SBML MML
cbf00410 beta-Alanine metabolism SBML MML
cbf00430 Taurine and hypotaurine metabolism SBML MML
cbf00450 Selenoamino acid metabolism SBML MML
cbf00460 (Undocumented) SBML MML
cbf00471 D-Glutamine and D-glutamate metabolism SBML MML
cbf00473 D-Alanine metabolism SBML MML
cbf00500 Starch and sucrose metabolism SBML MML
cbf00510 (Undocumented) SBML MML
cbf00520 Amino sugar and nucleotide sugar metabolism SBML MML
cbf00521 Streptomycin biosynthesis SBML MML
cbf00523 Polyketide sugar unit biosynthesis SBML MML
cbf00530 (Undocumented) SBML MML
cbf00550 Peptidoglycan biosynthesis SBML MML
cbf00561 Glycerolipid metabolism SBML MML
cbf00564 Glycerophospholipid metabolism SBML MML
cbf00600 Sphingolipid metabolism SBML MML
cbf00620 Pyruvate metabolism SBML MML
cbf00624 1- and 2-Methylnaphthalene degradation SBML MML
cbf00625 (Undocumented) SBML MML
cbf00630 Glyoxylate and dicarboxylate metabolism SBML MML
cbf00632 (Undocumented) SBML MML
cbf00640 Propanoate metabolism SBML MML
cbf00641 3-Chloroacrylic acid degradation SBML MML
cbf00650 Butanoate metabolism SBML MML
cbf00670 One carbon pool by folate SBML MML
cbf00680 Methane metabolism SBML MML
cbf00710 (Undocumented) SBML MML
cbf00720 (Undocumented) SBML MML
cbf00730 Thiamine metabolism SBML MML
cbf00740 Riboflavin metabolism SBML MML
cbf00750 Vitamin B6 metabolism SBML MML
cbf00760 Nicotinate and nicotinamide metabolism SBML MML
cbf00770 Pantothenate and CoA biosynthesis SBML MML
cbf00780 Biotin metabolism SBML MML
cbf00790 Folate biosynthesis SBML MML
cbf00860 Porphyrin and chlorophyll metabolism SBML MML
cbf00900 Terpenoid backbone biosynthesis SBML MML
cbf00903 (Undocumented) SBML MML
cbf00910 Nitrogen metabolism SBML MML
cbf00920 Sulfur metabolism SBML MML
cbf00930 Caprolactam degradation SBML MML
cbf00960 (Undocumented) SBML MML
cbf00970 Aminoacyl-tRNA biosynthesis SBML MML
cbf00982 (Undocumented) SBML MML
cbf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.