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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cba: Clostridium botulinum A ATCC 19397

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cba00010 Glycolysis / Gluconeogenesis SBML MML
cba00020 Citrate cycle (TCA cycle) SBML MML
cba00030 Pentose phosphate pathway SBML MML
cba00040 Pentose and glucuronate interconversions SBML MML
cba00051 Fructose and mannose metabolism SBML MML
cba00052 Galactose metabolism SBML MML
cba00053 Ascorbate and aldarate metabolism SBML MML
cba00061 Fatty acid biosynthesis SBML MML
cba00071 Fatty acid metabolism SBML MML
cba00100 (Undocumented) SBML MML
cba00120 (Undocumented) SBML MML
cba00220 (Undocumented) SBML MML
cba00230 Purine metabolism SBML MML
cba00240 Pyrimidine metabolism SBML MML
cba00251 (Undocumented) SBML MML
cba00252 (Undocumented) SBML MML
cba00260 Glycine, serine and threonine metabolism SBML MML
cba00271 (Undocumented) SBML MML
cba00272 (Undocumented) SBML MML
cba00280 Valine, leucine and isoleucine degradation SBML MML
cba00290 Valine, leucine and isoleucine biosynthesis SBML MML
cba00300 Lysine biosynthesis SBML MML
cba00310 Lysine degradation SBML MML
cba00330 Arginine and proline metabolism SBML MML
cba00340 Histidine metabolism SBML MML
cba00350 Tyrosine metabolism SBML MML
cba00360 Phenylalanine metabolism SBML MML
cba00362 (Undocumented) SBML MML
cba00380 Tryptophan metabolism SBML MML
cba00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cba00401 Novobiocin biosynthesis SBML MML
cba00410 beta-Alanine metabolism SBML MML
cba00430 Taurine and hypotaurine metabolism SBML MML
cba00450 Selenoamino acid metabolism SBML MML
cba00460 (Undocumented) SBML MML
cba00471 D-Glutamine and D-glutamate metabolism SBML MML
cba00473 D-Alanine metabolism SBML MML
cba00500 Starch and sucrose metabolism SBML MML
cba00510 (Undocumented) SBML MML
cba00520 Amino sugar and nucleotide sugar metabolism SBML MML
cba00521 Streptomycin biosynthesis SBML MML
cba00523 Polyketide sugar unit biosynthesis SBML MML
cba00530 (Undocumented) SBML MML
cba00550 Peptidoglycan biosynthesis SBML MML
cba00561 Glycerolipid metabolism SBML MML
cba00564 Glycerophospholipid metabolism SBML MML
cba00600 Sphingolipid metabolism SBML MML
cba00620 Pyruvate metabolism SBML MML
cba00624 1- and 2-Methylnaphthalene degradation SBML MML
cba00625 (Undocumented) SBML MML
cba00630 Glyoxylate and dicarboxylate metabolism SBML MML
cba00631 1,2-Dichloroethane degradation SBML MML
cba00632 (Undocumented) SBML MML
cba00640 Propanoate metabolism SBML MML
cba00641 3-Chloroacrylic acid degradation SBML MML
cba00650 Butanoate metabolism SBML MML
cba00670 One carbon pool by folate SBML MML
cba00680 Methane metabolism SBML MML
cba00710 (Undocumented) SBML MML
cba00720 (Undocumented) SBML MML
cba00730 Thiamine metabolism SBML MML
cba00740 Riboflavin metabolism SBML MML
cba00750 Vitamin B6 metabolism SBML MML
cba00760 Nicotinate and nicotinamide metabolism SBML MML
cba00770 Pantothenate and CoA biosynthesis SBML MML
cba00780 Biotin metabolism SBML MML
cba00790 Folate biosynthesis SBML MML
cba00860 Porphyrin and chlorophyll metabolism SBML MML
cba00900 Terpenoid backbone biosynthesis SBML MML
cba00903 (Undocumented) SBML MML
cba00910 Nitrogen metabolism SBML MML
cba00920 Sulfur metabolism SBML MML
cba00940 (Undocumented) SBML MML
cba00950 (Undocumented) SBML MML
cba00960 (Undocumented) SBML MML
cba00970 Aminoacyl-tRNA biosynthesis SBML MML
cba00982 (Undocumented) SBML MML
cba00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.