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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cau: Chloroflexus aurantiacus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cau00010 Glycolysis / Gluconeogenesis SBML MML
cau00020 Citrate cycle (TCA cycle) SBML MML
cau00030 Pentose phosphate pathway SBML MML
cau00040 Pentose and glucuronate interconversions SBML MML
cau00051 Fructose and mannose metabolism SBML MML
cau00052 Galactose metabolism SBML MML
cau00053 Ascorbate and aldarate metabolism SBML MML
cau00061 Fatty acid biosynthesis SBML MML
cau00062 Fatty acid elongation in mitochondria SBML MML
cau00071 Fatty acid metabolism SBML MML
cau00072 Synthesis and degradation of ketone bodies SBML MML
cau00100 (Undocumented) SBML MML
cau00120 (Undocumented) SBML MML
cau00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cau00220 (Undocumented) SBML MML
cau00230 Purine metabolism SBML MML
cau00240 Pyrimidine metabolism SBML MML
cau00251 (Undocumented) SBML MML
cau00252 (Undocumented) SBML MML
cau00260 Glycine, serine and threonine metabolism SBML MML
cau00271 (Undocumented) SBML MML
cau00272 (Undocumented) SBML MML
cau00280 Valine, leucine and isoleucine degradation SBML MML
cau00281 Geraniol degradation SBML MML
cau00290 Valine, leucine and isoleucine biosynthesis SBML MML
cau00300 Lysine biosynthesis SBML MML
cau00310 Lysine degradation SBML MML
cau00330 Arginine and proline metabolism SBML MML
cau00340 Histidine metabolism SBML MML
cau00350 Tyrosine metabolism SBML MML
cau00360 Phenylalanine metabolism SBML MML
cau00361 gamma-Hexachlorocyclohexane degradation SBML MML
cau00362 (Undocumented) SBML MML
cau00364 Fluorobenzoate degradation SBML MML
cau00380 Tryptophan metabolism SBML MML
cau00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cau00401 Novobiocin biosynthesis SBML MML
cau00410 beta-Alanine metabolism SBML MML
cau00430 Taurine and hypotaurine metabolism SBML MML
cau00450 Selenoamino acid metabolism SBML MML
cau00460 (Undocumented) SBML MML
cau00471 D-Glutamine and D-glutamate metabolism SBML MML
cau00473 D-Alanine metabolism SBML MML
cau00480 Glutathione metabolism SBML MML
cau00500 Starch and sucrose metabolism SBML MML
cau00510 (Undocumented) SBML MML
cau00520 Amino sugar and nucleotide sugar metabolism SBML MML
cau00521 Streptomycin biosynthesis SBML MML
cau00523 Polyketide sugar unit biosynthesis SBML MML
cau00530 (Undocumented) SBML MML
cau00540 Lipopolysaccharide biosynthesis SBML MML
cau00550 Peptidoglycan biosynthesis SBML MML
cau00561 Glycerolipid metabolism SBML MML
cau00562 Inositol phosphate metabolism SBML MML
cau00564 Glycerophospholipid metabolism SBML MML
cau00590 Arachidonic acid metabolism SBML MML
cau00592 alpha-Linolenic acid metabolism SBML MML
cau00600 Sphingolipid metabolism SBML MML
cau00620 Pyruvate metabolism SBML MML
cau00621 (Undocumented) SBML MML
cau00622 Toluene and xylene degradation SBML MML
cau00624 1- and 2-Methylnaphthalene degradation SBML MML
cau00625 (Undocumented) SBML MML
cau00627 1,4-Dichlorobenzene degradation SBML MML
cau00628 Fluorene degradation SBML MML
cau00629 Carbazole degradation SBML MML
cau00630 Glyoxylate and dicarboxylate metabolism SBML MML
cau00631 1,2-Dichloroethane degradation SBML MML
cau00632 (Undocumented) SBML MML
cau00640 Propanoate metabolism SBML MML
cau00641 3-Chloroacrylic acid degradation SBML MML
cau00642 Ethylbenzene degradation SBML MML
cau00643 Styrene degradation SBML MML
cau00650 Butanoate metabolism SBML MML
cau00660 C5-Branched dibasic acid metabolism SBML MML
cau00670 One carbon pool by folate SBML MML
cau00680 Methane metabolism SBML MML
cau00710 (Undocumented) SBML MML
cau00720 (Undocumented) SBML MML
cau00730 Thiamine metabolism SBML MML
cau00740 Riboflavin metabolism SBML MML
cau00750 Vitamin B6 metabolism SBML MML
cau00760 Nicotinate and nicotinamide metabolism SBML MML
cau00770 Pantothenate and CoA biosynthesis SBML MML
cau00780 Biotin metabolism SBML MML
cau00785 Lipoic acid metabolism SBML MML
cau00790 Folate biosynthesis SBML MML
cau00860 Porphyrin and chlorophyll metabolism SBML MML
cau00900 Terpenoid backbone biosynthesis SBML MML
cau00903 (Undocumented) SBML MML
cau00906 Carotenoid biosynthesis SBML MML
cau00910 Nitrogen metabolism SBML MML
cau00920 Sulfur metabolism SBML MML
cau00930 Caprolactam degradation SBML MML
cau00941 (Undocumented) SBML MML
cau00950 (Undocumented) SBML MML
cau00960 (Undocumented) SBML MML
cau00970 Aminoacyl-tRNA biosynthesis SBML MML
cau00982 (Undocumented) SBML MML
cau00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.