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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cak: Caulobacter sp. K31

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cak00010 Glycolysis / Gluconeogenesis SBML MML
cak00020 Citrate cycle (TCA cycle) SBML MML
cak00030 Pentose phosphate pathway SBML MML
cak00031 (Undocumented) SBML MML
cak00040 Pentose and glucuronate interconversions SBML MML
cak00051 Fructose and mannose metabolism SBML MML
cak00052 Galactose metabolism SBML MML
cak00053 Ascorbate and aldarate metabolism SBML MML
cak00061 Fatty acid biosynthesis SBML MML
cak00062 Fatty acid elongation in mitochondria SBML MML
cak00071 Fatty acid metabolism SBML MML
cak00072 Synthesis and degradation of ketone bodies SBML MML
cak00100 (Undocumented) SBML MML
cak00120 (Undocumented) SBML MML
cak00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cak00150 Androgen and estrogen metabolism SBML MML
cak00220 (Undocumented) SBML MML
cak00230 Purine metabolism SBML MML
cak00240 Pyrimidine metabolism SBML MML
cak00251 (Undocumented) SBML MML
cak00252 (Undocumented) SBML MML
cak00260 Glycine, serine and threonine metabolism SBML MML
cak00271 (Undocumented) SBML MML
cak00272 (Undocumented) SBML MML
cak00280 Valine, leucine and isoleucine degradation SBML MML
cak00281 Geraniol degradation SBML MML
cak00290 Valine, leucine and isoleucine biosynthesis SBML MML
cak00300 Lysine biosynthesis SBML MML
cak00310 Lysine degradation SBML MML
cak00330 Arginine and proline metabolism SBML MML
cak00340 Histidine metabolism SBML MML
cak00350 Tyrosine metabolism SBML MML
cak00360 Phenylalanine metabolism SBML MML
cak00361 gamma-Hexachlorocyclohexane degradation SBML MML
cak00362 (Undocumented) SBML MML
cak00364 Fluorobenzoate degradation SBML MML
cak00380 Tryptophan metabolism SBML MML
cak00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cak00401 Novobiocin biosynthesis SBML MML
cak00410 beta-Alanine metabolism SBML MML
cak00430 Taurine and hypotaurine metabolism SBML MML
cak00440 Phosphonate and phosphinate metabolism SBML MML
cak00450 Selenoamino acid metabolism SBML MML
cak00460 (Undocumented) SBML MML
cak00471 D-Glutamine and D-glutamate metabolism SBML MML
cak00472 D-Arginine and D-ornithine metabolism SBML MML
cak00473 D-Alanine metabolism SBML MML
cak00480 Glutathione metabolism SBML MML
cak00500 Starch and sucrose metabolism SBML MML
cak00520 Amino sugar and nucleotide sugar metabolism SBML MML
cak00521 Streptomycin biosynthesis SBML MML
cak00523 Polyketide sugar unit biosynthesis SBML MML
cak00530 (Undocumented) SBML MML
cak00540 Lipopolysaccharide biosynthesis SBML MML
cak00550 Peptidoglycan biosynthesis SBML MML
cak00561 Glycerolipid metabolism SBML MML
cak00562 Inositol phosphate metabolism SBML MML
cak00564 Glycerophospholipid metabolism SBML MML
cak00565 Ether lipid metabolism SBML MML
cak00590 Arachidonic acid metabolism SBML MML
cak00592 alpha-Linolenic acid metabolism SBML MML
cak00600 Sphingolipid metabolism SBML MML
cak00620 Pyruvate metabolism SBML MML
cak00621 (Undocumented) SBML MML
cak00623 2,4-Dichlorobenzoate degradation SBML MML
cak00624 1- and 2-Methylnaphthalene degradation SBML MML
cak00626 Naphthalene and anthracene degradation SBML MML
cak00627 1,4-Dichlorobenzene degradation SBML MML
cak00628 Fluorene degradation SBML MML
cak00630 Glyoxylate and dicarboxylate metabolism SBML MML
cak00631 1,2-Dichloroethane degradation SBML MML
cak00632 (Undocumented) SBML MML
cak00640 Propanoate metabolism SBML MML
cak00641 3-Chloroacrylic acid degradation SBML MML
cak00642 Ethylbenzene degradation SBML MML
cak00643 Styrene degradation SBML MML
cak00650 Butanoate metabolism SBML MML
cak00660 C5-Branched dibasic acid metabolism SBML MML
cak00670 One carbon pool by folate SBML MML
cak00680 Methane metabolism SBML MML
cak00710 (Undocumented) SBML MML
cak00720 (Undocumented) SBML MML
cak00730 Thiamine metabolism SBML MML
cak00740 Riboflavin metabolism SBML MML
cak00750 Vitamin B6 metabolism SBML MML
cak00760 Nicotinate and nicotinamide metabolism SBML MML
cak00770 Pantothenate and CoA biosynthesis SBML MML
cak00780 Biotin metabolism SBML MML
cak00785 Lipoic acid metabolism SBML MML
cak00790 Folate biosynthesis SBML MML
cak00791 Atrazine degradation SBML MML
cak00860 Porphyrin and chlorophyll metabolism SBML MML
cak00900 Terpenoid backbone biosynthesis SBML MML
cak00903 (Undocumented) SBML MML
cak00906 Carotenoid biosynthesis SBML MML
cak00910 Nitrogen metabolism SBML MML
cak00920 Sulfur metabolism SBML MML
cak00930 Caprolactam degradation SBML MML
cak00940 (Undocumented) SBML MML
cak00941 (Undocumented) SBML MML
cak00950 (Undocumented) SBML MML
cak00960 (Undocumented) SBML MML
cak00970 Aminoacyl-tRNA biosynthesis SBML MML
cak00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cak00982 (Undocumented) SBML MML
cak00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.