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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bth: Bacteroides thetaiotaomicron

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bth00010 Glycolysis / Gluconeogenesis SBML MML
bth00020 Citrate cycle (TCA cycle) SBML MML
bth00030 Pentose phosphate pathway SBML MML
bth00040 Pentose and glucuronate interconversions SBML MML
bth00051 Fructose and mannose metabolism SBML MML
bth00052 Galactose metabolism SBML MML
bth00053 Ascorbate and aldarate metabolism SBML MML
bth00061 Fatty acid biosynthesis SBML MML
bth00100 (Undocumented) SBML MML
bth00120 (Undocumented) SBML MML
bth00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bth00150 Androgen and estrogen metabolism SBML MML
bth00220 (Undocumented) SBML MML
bth00230 Purine metabolism SBML MML
bth00240 Pyrimidine metabolism SBML MML
bth00251 (Undocumented) SBML MML
bth00252 (Undocumented) SBML MML
bth00260 Glycine, serine and threonine metabolism SBML MML
bth00271 (Undocumented) SBML MML
bth00272 (Undocumented) SBML MML
bth00280 Valine, leucine and isoleucine degradation SBML MML
bth00281 Geraniol degradation SBML MML
bth00290 Valine, leucine and isoleucine biosynthesis SBML MML
bth00300 Lysine biosynthesis SBML MML
bth00330 Arginine and proline metabolism SBML MML
bth00340 Histidine metabolism SBML MML
bth00350 Tyrosine metabolism SBML MML
bth00360 Phenylalanine metabolism SBML MML
bth00361 gamma-Hexachlorocyclohexane degradation SBML MML
bth00363 Bisphenol A degradation SBML MML
bth00380 Tryptophan metabolism SBML MML
bth00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bth00401 Novobiocin biosynthesis SBML MML
bth00410 beta-Alanine metabolism SBML MML
bth00430 Taurine and hypotaurine metabolism SBML MML
bth00440 Phosphonate and phosphinate metabolism SBML MML
bth00450 Selenoamino acid metabolism SBML MML
bth00460 (Undocumented) SBML MML
bth00471 D-Glutamine and D-glutamate metabolism SBML MML
bth00473 D-Alanine metabolism SBML MML
bth00480 Glutathione metabolism SBML MML
bth00500 Starch and sucrose metabolism SBML MML
bth00520 Amino sugar and nucleotide sugar metabolism SBML MML
bth00521 Streptomycin biosynthesis SBML MML
bth00523 Polyketide sugar unit biosynthesis SBML MML
bth00530 (Undocumented) SBML MML
bth00540 Lipopolysaccharide biosynthesis SBML MML
bth00550 Peptidoglycan biosynthesis SBML MML
bth00561 Glycerolipid metabolism SBML MML
bth00562 Inositol phosphate metabolism SBML MML
bth00564 Glycerophospholipid metabolism SBML MML
bth00590 Arachidonic acid metabolism SBML MML
bth00600 Sphingolipid metabolism SBML MML
bth00620 Pyruvate metabolism SBML MML
bth00624 1- and 2-Methylnaphthalene degradation SBML MML
bth00626 Naphthalene and anthracene degradation SBML MML
bth00630 Glyoxylate and dicarboxylate metabolism SBML MML
bth00632 (Undocumented) SBML MML
bth00640 Propanoate metabolism SBML MML
bth00650 Butanoate metabolism SBML MML
bth00660 C5-Branched dibasic acid metabolism SBML MML
bth00670 One carbon pool by folate SBML MML
bth00680 Methane metabolism SBML MML
bth00710 (Undocumented) SBML MML
bth00720 (Undocumented) SBML MML
bth00730 Thiamine metabolism SBML MML
bth00740 Riboflavin metabolism SBML MML
bth00750 Vitamin B6 metabolism SBML MML
bth00760 Nicotinate and nicotinamide metabolism SBML MML
bth00770 Pantothenate and CoA biosynthesis SBML MML
bth00780 Biotin metabolism SBML MML
bth00785 Lipoic acid metabolism SBML MML
bth00790 Folate biosynthesis SBML MML
bth00860 Porphyrin and chlorophyll metabolism SBML MML
bth00900 Terpenoid backbone biosynthesis SBML MML
bth00903 (Undocumented) SBML MML
bth00910 Nitrogen metabolism SBML MML
bth00920 Sulfur metabolism SBML MML
bth00940 (Undocumented) SBML MML
bth00950 (Undocumented) SBML MML
bth00960 (Undocumented) SBML MML
bth00970 Aminoacyl-tRNA biosynthesis SBML MML
bth00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.