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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bpm: Burkholderia pseudomallei 1710b

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bpm00010 Glycolysis / Gluconeogenesis SBML MML
bpm00020 Citrate cycle (TCA cycle) SBML MML
bpm00030 Pentose phosphate pathway SBML MML
bpm00031 (Undocumented) SBML MML
bpm00040 Pentose and glucuronate interconversions SBML MML
bpm00051 Fructose and mannose metabolism SBML MML
bpm00052 Galactose metabolism SBML MML
bpm00053 Ascorbate and aldarate metabolism SBML MML
bpm00061 Fatty acid biosynthesis SBML MML
bpm00062 Fatty acid elongation in mitochondria SBML MML
bpm00071 Fatty acid metabolism SBML MML
bpm00072 Synthesis and degradation of ketone bodies SBML MML
bpm00100 (Undocumented) SBML MML
bpm00120 (Undocumented) SBML MML
bpm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bpm00150 Androgen and estrogen metabolism SBML MML
bpm00220 (Undocumented) SBML MML
bpm00230 Purine metabolism SBML MML
bpm00240 Pyrimidine metabolism SBML MML
bpm00251 (Undocumented) SBML MML
bpm00252 (Undocumented) SBML MML
bpm00260 Glycine, serine and threonine metabolism SBML MML
bpm00271 (Undocumented) SBML MML
bpm00272 (Undocumented) SBML MML
bpm00280 Valine, leucine and isoleucine degradation SBML MML
bpm00281 Geraniol degradation SBML MML
bpm00290 Valine, leucine and isoleucine biosynthesis SBML MML
bpm00300 Lysine biosynthesis SBML MML
bpm00310 Lysine degradation SBML MML
bpm00311 Penicillin and cephalosporin biosynthesis SBML MML
bpm00330 Arginine and proline metabolism SBML MML
bpm00340 Histidine metabolism SBML MML
bpm00350 Tyrosine metabolism SBML MML
bpm00360 Phenylalanine metabolism SBML MML
bpm00361 gamma-Hexachlorocyclohexane degradation SBML MML
bpm00362 (Undocumented) SBML MML
bpm00363 Bisphenol A degradation SBML MML
bpm00364 Fluorobenzoate degradation SBML MML
bpm00380 Tryptophan metabolism SBML MML
bpm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bpm00401 Novobiocin biosynthesis SBML MML
bpm00410 beta-Alanine metabolism SBML MML
bpm00430 Taurine and hypotaurine metabolism SBML MML
bpm00440 Phosphonate and phosphinate metabolism SBML MML
bpm00450 Selenoamino acid metabolism SBML MML
bpm00460 (Undocumented) SBML MML
bpm00471 D-Glutamine and D-glutamate metabolism SBML MML
bpm00472 D-Arginine and D-ornithine metabolism SBML MML
bpm00473 D-Alanine metabolism SBML MML
bpm00480 Glutathione metabolism SBML MML
bpm00500 Starch and sucrose metabolism SBML MML
bpm00520 Amino sugar and nucleotide sugar metabolism SBML MML
bpm00521 Streptomycin biosynthesis SBML MML
bpm00523 Polyketide sugar unit biosynthesis SBML MML
bpm00530 (Undocumented) SBML MML
bpm00540 Lipopolysaccharide biosynthesis SBML MML
bpm00550 Peptidoglycan biosynthesis SBML MML
bpm00561 Glycerolipid metabolism SBML MML
bpm00562 Inositol phosphate metabolism SBML MML
bpm00564 Glycerophospholipid metabolism SBML MML
bpm00565 Ether lipid metabolism SBML MML
bpm00590 Arachidonic acid metabolism SBML MML
bpm00592 alpha-Linolenic acid metabolism SBML MML
bpm00600 Sphingolipid metabolism SBML MML
bpm00620 Pyruvate metabolism SBML MML
bpm00622 Toluene and xylene degradation SBML MML
bpm00623 2,4-Dichlorobenzoate degradation SBML MML
bpm00624 1- and 2-Methylnaphthalene degradation SBML MML
bpm00626 Naphthalene and anthracene degradation SBML MML
bpm00627 1,4-Dichlorobenzene degradation SBML MML
bpm00628 Fluorene degradation SBML MML
bpm00629 Carbazole degradation SBML MML
bpm00630 Glyoxylate and dicarboxylate metabolism SBML MML
bpm00631 1,2-Dichloroethane degradation SBML MML
bpm00632 (Undocumented) SBML MML
bpm00640 Propanoate metabolism SBML MML
bpm00641 3-Chloroacrylic acid degradation SBML MML
bpm00642 Ethylbenzene degradation SBML MML
bpm00643 Styrene degradation SBML MML
bpm00650 Butanoate metabolism SBML MML
bpm00660 C5-Branched dibasic acid metabolism SBML MML
bpm00670 One carbon pool by folate SBML MML
bpm00680 Methane metabolism SBML MML
bpm00710 (Undocumented) SBML MML
bpm00720 (Undocumented) SBML MML
bpm00730 Thiamine metabolism SBML MML
bpm00740 Riboflavin metabolism SBML MML
bpm00750 Vitamin B6 metabolism SBML MML
bpm00760 Nicotinate and nicotinamide metabolism SBML MML
bpm00770 Pantothenate and CoA biosynthesis SBML MML
bpm00780 Biotin metabolism SBML MML
bpm00785 Lipoic acid metabolism SBML MML
bpm00790 Folate biosynthesis SBML MML
bpm00791 Atrazine degradation SBML MML
bpm00860 Porphyrin and chlorophyll metabolism SBML MML
bpm00900 Terpenoid backbone biosynthesis SBML MML
bpm00903 (Undocumented) SBML MML
bpm00910 Nitrogen metabolism SBML MML
bpm00920 Sulfur metabolism SBML MML
bpm00930 Caprolactam degradation SBML MML
bpm00940 (Undocumented) SBML MML
bpm00941 (Undocumented) SBML MML
bpm00950 (Undocumented) SBML MML
bpm00960 (Undocumented) SBML MML
bpm00970 Aminoacyl-tRNA biosynthesis SBML MML
bpm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bpm00982 (Undocumented) SBML MML
bpm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.