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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bmt: Brucella suis ATCC 23445

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bmt00010 Glycolysis / Gluconeogenesis SBML MML
bmt00020 Citrate cycle (TCA cycle) SBML MML
bmt00030 Pentose phosphate pathway SBML MML
bmt00031 (Undocumented) SBML MML
bmt00040 Pentose and glucuronate interconversions SBML MML
bmt00051 Fructose and mannose metabolism SBML MML
bmt00052 Galactose metabolism SBML MML
bmt00053 Ascorbate and aldarate metabolism SBML MML
bmt00061 Fatty acid biosynthesis SBML MML
bmt00062 Fatty acid elongation in mitochondria SBML MML
bmt00071 Fatty acid metabolism SBML MML
bmt00072 Synthesis and degradation of ketone bodies SBML MML
bmt00100 (Undocumented) SBML MML
bmt00120 (Undocumented) SBML MML
bmt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bmt00220 (Undocumented) SBML MML
bmt00230 Purine metabolism SBML MML
bmt00240 Pyrimidine metabolism SBML MML
bmt00251 (Undocumented) SBML MML
bmt00252 (Undocumented) SBML MML
bmt00260 Glycine, serine and threonine metabolism SBML MML
bmt00271 (Undocumented) SBML MML
bmt00272 (Undocumented) SBML MML
bmt00280 Valine, leucine and isoleucine degradation SBML MML
bmt00281 Geraniol degradation SBML MML
bmt00290 Valine, leucine and isoleucine biosynthesis SBML MML
bmt00300 Lysine biosynthesis SBML MML
bmt00310 Lysine degradation SBML MML
bmt00330 Arginine and proline metabolism SBML MML
bmt00340 Histidine metabolism SBML MML
bmt00350 Tyrosine metabolism SBML MML
bmt00360 Phenylalanine metabolism SBML MML
bmt00361 gamma-Hexachlorocyclohexane degradation SBML MML
bmt00362 (Undocumented) SBML MML
bmt00380 Tryptophan metabolism SBML MML
bmt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bmt00401 Novobiocin biosynthesis SBML MML
bmt00410 beta-Alanine metabolism SBML MML
bmt00430 Taurine and hypotaurine metabolism SBML MML
bmt00440 Phosphonate and phosphinate metabolism SBML MML
bmt00450 Selenoamino acid metabolism SBML MML
bmt00460 (Undocumented) SBML MML
bmt00471 D-Glutamine and D-glutamate metabolism SBML MML
bmt00472 D-Arginine and D-ornithine metabolism SBML MML
bmt00473 D-Alanine metabolism SBML MML
bmt00480 Glutathione metabolism SBML MML
bmt00500 Starch and sucrose metabolism SBML MML
bmt00520 Amino sugar and nucleotide sugar metabolism SBML MML
bmt00521 Streptomycin biosynthesis SBML MML
bmt00523 Polyketide sugar unit biosynthesis SBML MML
bmt00530 (Undocumented) SBML MML
bmt00540 Lipopolysaccharide biosynthesis SBML MML
bmt00550 Peptidoglycan biosynthesis SBML MML
bmt00561 Glycerolipid metabolism SBML MML
bmt00562 Inositol phosphate metabolism SBML MML
bmt00564 Glycerophospholipid metabolism SBML MML
bmt00592 alpha-Linolenic acid metabolism SBML MML
bmt00620 Pyruvate metabolism SBML MML
bmt00622 Toluene and xylene degradation SBML MML
bmt00624 1- and 2-Methylnaphthalene degradation SBML MML
bmt00626 Naphthalene and anthracene degradation SBML MML
bmt00627 1,4-Dichlorobenzene degradation SBML MML
bmt00628 Fluorene degradation SBML MML
bmt00630 Glyoxylate and dicarboxylate metabolism SBML MML
bmt00631 1,2-Dichloroethane degradation SBML MML
bmt00632 (Undocumented) SBML MML
bmt00640 Propanoate metabolism SBML MML
bmt00641 3-Chloroacrylic acid degradation SBML MML
bmt00650 Butanoate metabolism SBML MML
bmt00660 C5-Branched dibasic acid metabolism SBML MML
bmt00670 One carbon pool by folate SBML MML
bmt00680 Methane metabolism SBML MML
bmt00710 (Undocumented) SBML MML
bmt00720 (Undocumented) SBML MML
bmt00730 Thiamine metabolism SBML MML
bmt00740 Riboflavin metabolism SBML MML
bmt00750 Vitamin B6 metabolism SBML MML
bmt00760 Nicotinate and nicotinamide metabolism SBML MML
bmt00770 Pantothenate and CoA biosynthesis SBML MML
bmt00780 Biotin metabolism SBML MML
bmt00785 Lipoic acid metabolism SBML MML
bmt00790 Folate biosynthesis SBML MML
bmt00791 Atrazine degradation SBML MML
bmt00860 Porphyrin and chlorophyll metabolism SBML MML
bmt00900 Terpenoid backbone biosynthesis SBML MML
bmt00903 (Undocumented) SBML MML
bmt00910 Nitrogen metabolism SBML MML
bmt00920 Sulfur metabolism SBML MML
bmt00930 Caprolactam degradation SBML MML
bmt00940 (Undocumented) SBML MML
bmt00950 (Undocumented) SBML MML
bmt00970 Aminoacyl-tRNA biosynthesis SBML MML
bmt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bmt00982 (Undocumented) SBML MML
bmt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.