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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bmf: Brucella melitensis biovar Abortus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bmf00010 Glycolysis / Gluconeogenesis SBML MML
bmf00020 Citrate cycle (TCA cycle) SBML MML
bmf00030 Pentose phosphate pathway SBML MML
bmf00031 (Undocumented) SBML MML
bmf00040 Pentose and glucuronate interconversions SBML MML
bmf00051 Fructose and mannose metabolism SBML MML
bmf00052 Galactose metabolism SBML MML
bmf00053 Ascorbate and aldarate metabolism SBML MML
bmf00061 Fatty acid biosynthesis SBML MML
bmf00062 Fatty acid elongation in mitochondria SBML MML
bmf00071 Fatty acid metabolism SBML MML
bmf00072 Synthesis and degradation of ketone bodies SBML MML
bmf00100 (Undocumented) SBML MML
bmf00120 (Undocumented) SBML MML
bmf00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bmf00150 Androgen and estrogen metabolism SBML MML
bmf00220 (Undocumented) SBML MML
bmf00230 Purine metabolism SBML MML
bmf00240 Pyrimidine metabolism SBML MML
bmf00251 (Undocumented) SBML MML
bmf00252 (Undocumented) SBML MML
bmf00260 Glycine, serine and threonine metabolism SBML MML
bmf00271 (Undocumented) SBML MML
bmf00272 (Undocumented) SBML MML
bmf00280 Valine, leucine and isoleucine degradation SBML MML
bmf00281 Geraniol degradation SBML MML
bmf00290 Valine, leucine and isoleucine biosynthesis SBML MML
bmf00300 Lysine biosynthesis SBML MML
bmf00310 Lysine degradation SBML MML
bmf00330 Arginine and proline metabolism SBML MML
bmf00340 Histidine metabolism SBML MML
bmf00350 Tyrosine metabolism SBML MML
bmf00360 Phenylalanine metabolism SBML MML
bmf00361 gamma-Hexachlorocyclohexane degradation SBML MML
bmf00362 (Undocumented) SBML MML
bmf00363 Bisphenol A degradation SBML MML
bmf00380 Tryptophan metabolism SBML MML
bmf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bmf00401 Novobiocin biosynthesis SBML MML
bmf00410 beta-Alanine metabolism SBML MML
bmf00430 Taurine and hypotaurine metabolism SBML MML
bmf00440 Phosphonate and phosphinate metabolism SBML MML
bmf00450 Selenoamino acid metabolism SBML MML
bmf00460 (Undocumented) SBML MML
bmf00471 D-Glutamine and D-glutamate metabolism SBML MML
bmf00472 D-Arginine and D-ornithine metabolism SBML MML
bmf00473 D-Alanine metabolism SBML MML
bmf00480 Glutathione metabolism SBML MML
bmf00500 Starch and sucrose metabolism SBML MML
bmf00520 Amino sugar and nucleotide sugar metabolism SBML MML
bmf00521 Streptomycin biosynthesis SBML MML
bmf00530 (Undocumented) SBML MML
bmf00540 Lipopolysaccharide biosynthesis SBML MML
bmf00550 Peptidoglycan biosynthesis SBML MML
bmf00561 Glycerolipid metabolism SBML MML
bmf00562 Inositol phosphate metabolism SBML MML
bmf00564 Glycerophospholipid metabolism SBML MML
bmf00592 alpha-Linolenic acid metabolism SBML MML
bmf00620 Pyruvate metabolism SBML MML
bmf00621 (Undocumented) SBML MML
bmf00622 Toluene and xylene degradation SBML MML
bmf00624 1- and 2-Methylnaphthalene degradation SBML MML
bmf00626 Naphthalene and anthracene degradation SBML MML
bmf00627 1,4-Dichlorobenzene degradation SBML MML
bmf00628 Fluorene degradation SBML MML
bmf00630 Glyoxylate and dicarboxylate metabolism SBML MML
bmf00631 1,2-Dichloroethane degradation SBML MML
bmf00632 (Undocumented) SBML MML
bmf00640 Propanoate metabolism SBML MML
bmf00641 3-Chloroacrylic acid degradation SBML MML
bmf00642 Ethylbenzene degradation SBML MML
bmf00643 Styrene degradation SBML MML
bmf00650 Butanoate metabolism SBML MML
bmf00660 C5-Branched dibasic acid metabolism SBML MML
bmf00670 One carbon pool by folate SBML MML
bmf00680 Methane metabolism SBML MML
bmf00710 (Undocumented) SBML MML
bmf00720 (Undocumented) SBML MML
bmf00730 Thiamine metabolism SBML MML
bmf00740 Riboflavin metabolism SBML MML
bmf00750 Vitamin B6 metabolism SBML MML
bmf00760 Nicotinate and nicotinamide metabolism SBML MML
bmf00770 Pantothenate and CoA biosynthesis SBML MML
bmf00780 Biotin metabolism SBML MML
bmf00785 Lipoic acid metabolism SBML MML
bmf00790 Folate biosynthesis SBML MML
bmf00860 Porphyrin and chlorophyll metabolism SBML MML
bmf00900 Terpenoid backbone biosynthesis SBML MML
bmf00903 (Undocumented) SBML MML
bmf00910 Nitrogen metabolism SBML MML
bmf00920 Sulfur metabolism SBML MML
bmf00930 Caprolactam degradation SBML MML
bmf00940 (Undocumented) SBML MML
bmf00950 (Undocumented) SBML MML
bmf00960 (Undocumented) SBML MML
bmf00970 Aminoacyl-tRNA biosynthesis SBML MML
bmf00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bmf00982 (Undocumented) SBML MML
bmf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.