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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bmc: Brucella abortus S19

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bmc00010 Glycolysis / Gluconeogenesis SBML MML
bmc00020 Citrate cycle (TCA cycle) SBML MML
bmc00030 Pentose phosphate pathway SBML MML
bmc00031 (Undocumented) SBML MML
bmc00040 Pentose and glucuronate interconversions SBML MML
bmc00051 Fructose and mannose metabolism SBML MML
bmc00052 Galactose metabolism SBML MML
bmc00053 Ascorbate and aldarate metabolism SBML MML
bmc00061 Fatty acid biosynthesis SBML MML
bmc00062 Fatty acid elongation in mitochondria SBML MML
bmc00071 Fatty acid metabolism SBML MML
bmc00072 Synthesis and degradation of ketone bodies SBML MML
bmc00100 (Undocumented) SBML MML
bmc00120 (Undocumented) SBML MML
bmc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bmc00220 (Undocumented) SBML MML
bmc00230 Purine metabolism SBML MML
bmc00240 Pyrimidine metabolism SBML MML
bmc00251 (Undocumented) SBML MML
bmc00252 (Undocumented) SBML MML
bmc00260 Glycine, serine and threonine metabolism SBML MML
bmc00271 (Undocumented) SBML MML
bmc00272 (Undocumented) SBML MML
bmc00280 Valine, leucine and isoleucine degradation SBML MML
bmc00281 Geraniol degradation SBML MML
bmc00290 Valine, leucine and isoleucine biosynthesis SBML MML
bmc00300 Lysine biosynthesis SBML MML
bmc00310 Lysine degradation SBML MML
bmc00330 Arginine and proline metabolism SBML MML
bmc00340 Histidine metabolism SBML MML
bmc00350 Tyrosine metabolism SBML MML
bmc00360 Phenylalanine metabolism SBML MML
bmc00361 gamma-Hexachlorocyclohexane degradation SBML MML
bmc00362 (Undocumented) SBML MML
bmc00380 Tryptophan metabolism SBML MML
bmc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bmc00401 Novobiocin biosynthesis SBML MML
bmc00410 beta-Alanine metabolism SBML MML
bmc00430 Taurine and hypotaurine metabolism SBML MML
bmc00440 Phosphonate and phosphinate metabolism SBML MML
bmc00450 Selenoamino acid metabolism SBML MML
bmc00460 (Undocumented) SBML MML
bmc00471 D-Glutamine and D-glutamate metabolism SBML MML
bmc00472 D-Arginine and D-ornithine metabolism SBML MML
bmc00473 D-Alanine metabolism SBML MML
bmc00480 Glutathione metabolism SBML MML
bmc00500 Starch and sucrose metabolism SBML MML
bmc00520 Amino sugar and nucleotide sugar metabolism SBML MML
bmc00521 Streptomycin biosynthesis SBML MML
bmc00530 (Undocumented) SBML MML
bmc00540 Lipopolysaccharide biosynthesis SBML MML
bmc00550 Peptidoglycan biosynthesis SBML MML
bmc00561 Glycerolipid metabolism SBML MML
bmc00562 Inositol phosphate metabolism SBML MML
bmc00564 Glycerophospholipid metabolism SBML MML
bmc00592 alpha-Linolenic acid metabolism SBML MML
bmc00620 Pyruvate metabolism SBML MML
bmc00622 Toluene and xylene degradation SBML MML
bmc00623 2,4-Dichlorobenzoate degradation SBML MML
bmc00624 1- and 2-Methylnaphthalene degradation SBML MML
bmc00626 Naphthalene and anthracene degradation SBML MML
bmc00627 1,4-Dichlorobenzene degradation SBML MML
bmc00628 Fluorene degradation SBML MML
bmc00630 Glyoxylate and dicarboxylate metabolism SBML MML
bmc00631 1,2-Dichloroethane degradation SBML MML
bmc00632 (Undocumented) SBML MML
bmc00640 Propanoate metabolism SBML MML
bmc00641 3-Chloroacrylic acid degradation SBML MML
bmc00643 Styrene degradation SBML MML
bmc00650 Butanoate metabolism SBML MML
bmc00660 C5-Branched dibasic acid metabolism SBML MML
bmc00670 One carbon pool by folate SBML MML
bmc00680 Methane metabolism SBML MML
bmc00710 (Undocumented) SBML MML
bmc00720 (Undocumented) SBML MML
bmc00730 Thiamine metabolism SBML MML
bmc00740 Riboflavin metabolism SBML MML
bmc00750 Vitamin B6 metabolism SBML MML
bmc00760 Nicotinate and nicotinamide metabolism SBML MML
bmc00770 Pantothenate and CoA biosynthesis SBML MML
bmc00780 Biotin metabolism SBML MML
bmc00785 Lipoic acid metabolism SBML MML
bmc00790 Folate biosynthesis SBML MML
bmc00791 Atrazine degradation SBML MML
bmc00860 Porphyrin and chlorophyll metabolism SBML MML
bmc00900 Terpenoid backbone biosynthesis SBML MML
bmc00903 (Undocumented) SBML MML
bmc00910 Nitrogen metabolism SBML MML
bmc00920 Sulfur metabolism SBML MML
bmc00930 Caprolactam degradation SBML MML
bmc00940 (Undocumented) SBML MML
bmc00950 (Undocumented) SBML MML
bmc00970 Aminoacyl-tRNA biosynthesis SBML MML
bmc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bmc00982 (Undocumented) SBML MML
bmc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.