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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bmb: Brucella abortus 9-941

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bmb00010 Glycolysis / Gluconeogenesis SBML MML
bmb00020 Citrate cycle (TCA cycle) SBML MML
bmb00030 Pentose phosphate pathway SBML MML
bmb00031 (Undocumented) SBML MML
bmb00040 Pentose and glucuronate interconversions SBML MML
bmb00051 Fructose and mannose metabolism SBML MML
bmb00052 Galactose metabolism SBML MML
bmb00053 Ascorbate and aldarate metabolism SBML MML
bmb00061 Fatty acid biosynthesis SBML MML
bmb00062 Fatty acid elongation in mitochondria SBML MML
bmb00071 Fatty acid metabolism SBML MML
bmb00072 Synthesis and degradation of ketone bodies SBML MML
bmb00100 (Undocumented) SBML MML
bmb00120 (Undocumented) SBML MML
bmb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bmb00220 (Undocumented) SBML MML
bmb00230 Purine metabolism SBML MML
bmb00240 Pyrimidine metabolism SBML MML
bmb00251 (Undocumented) SBML MML
bmb00252 (Undocumented) SBML MML
bmb00260 Glycine, serine and threonine metabolism SBML MML
bmb00271 (Undocumented) SBML MML
bmb00272 (Undocumented) SBML MML
bmb00280 Valine, leucine and isoleucine degradation SBML MML
bmb00281 Geraniol degradation SBML MML
bmb00290 Valine, leucine and isoleucine biosynthesis SBML MML
bmb00300 Lysine biosynthesis SBML MML
bmb00310 Lysine degradation SBML MML
bmb00330 Arginine and proline metabolism SBML MML
bmb00340 Histidine metabolism SBML MML
bmb00350 Tyrosine metabolism SBML MML
bmb00360 Phenylalanine metabolism SBML MML
bmb00361 gamma-Hexachlorocyclohexane degradation SBML MML
bmb00362 (Undocumented) SBML MML
bmb00380 Tryptophan metabolism SBML MML
bmb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bmb00401 Novobiocin biosynthesis SBML MML
bmb00410 beta-Alanine metabolism SBML MML
bmb00440 Phosphonate and phosphinate metabolism SBML MML
bmb00450 Selenoamino acid metabolism SBML MML
bmb00460 (Undocumented) SBML MML
bmb00471 D-Glutamine and D-glutamate metabolism SBML MML
bmb00472 D-Arginine and D-ornithine metabolism SBML MML
bmb00473 D-Alanine metabolism SBML MML
bmb00480 Glutathione metabolism SBML MML
bmb00500 Starch and sucrose metabolism SBML MML
bmb00520 Amino sugar and nucleotide sugar metabolism SBML MML
bmb00521 Streptomycin biosynthesis SBML MML
bmb00530 (Undocumented) SBML MML
bmb00540 Lipopolysaccharide biosynthesis SBML MML
bmb00550 Peptidoglycan biosynthesis SBML MML
bmb00561 Glycerolipid metabolism SBML MML
bmb00562 Inositol phosphate metabolism SBML MML
bmb00564 Glycerophospholipid metabolism SBML MML
bmb00592 alpha-Linolenic acid metabolism SBML MML
bmb00620 Pyruvate metabolism SBML MML
bmb00622 Toluene and xylene degradation SBML MML
bmb00624 1- and 2-Methylnaphthalene degradation SBML MML
bmb00626 Naphthalene and anthracene degradation SBML MML
bmb00627 1,4-Dichlorobenzene degradation SBML MML
bmb00628 Fluorene degradation SBML MML
bmb00630 Glyoxylate and dicarboxylate metabolism SBML MML
bmb00631 1,2-Dichloroethane degradation SBML MML
bmb00632 (Undocumented) SBML MML
bmb00640 Propanoate metabolism SBML MML
bmb00641 3-Chloroacrylic acid degradation SBML MML
bmb00642 Ethylbenzene degradation SBML MML
bmb00643 Styrene degradation SBML MML
bmb00650 Butanoate metabolism SBML MML
bmb00660 C5-Branched dibasic acid metabolism SBML MML
bmb00670 One carbon pool by folate SBML MML
bmb00680 Methane metabolism SBML MML
bmb00710 (Undocumented) SBML MML
bmb00720 (Undocumented) SBML MML
bmb00730 Thiamine metabolism SBML MML
bmb00740 Riboflavin metabolism SBML MML
bmb00750 Vitamin B6 metabolism SBML MML
bmb00760 Nicotinate and nicotinamide metabolism SBML MML
bmb00770 Pantothenate and CoA biosynthesis SBML MML
bmb00780 Biotin metabolism SBML MML
bmb00785 Lipoic acid metabolism SBML MML
bmb00790 Folate biosynthesis SBML MML
bmb00860 Porphyrin and chlorophyll metabolism SBML MML
bmb00900 Terpenoid backbone biosynthesis SBML MML
bmb00903 (Undocumented) SBML MML
bmb00910 Nitrogen metabolism SBML MML
bmb00920 Sulfur metabolism SBML MML
bmb00930 Caprolactam degradation SBML MML
bmb00940 (Undocumented) SBML MML
bmb00950 (Undocumented) SBML MML
bmb00960 (Undocumented) SBML MML
bmb00970 Aminoacyl-tRNA biosynthesis SBML MML
bmb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bmb00982 (Undocumented) SBML MML
bmb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.