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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bld: Bacillus licheniformis DSM13

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bld00010 Glycolysis / Gluconeogenesis SBML MML
bld00020 Citrate cycle (TCA cycle) SBML MML
bld00030 Pentose phosphate pathway SBML MML
bld00031 (Undocumented) SBML MML
bld00040 Pentose and glucuronate interconversions SBML MML
bld00051 Fructose and mannose metabolism SBML MML
bld00052 Galactose metabolism SBML MML
bld00053 Ascorbate and aldarate metabolism SBML MML
bld00061 Fatty acid biosynthesis SBML MML
bld00062 Fatty acid elongation in mitochondria SBML MML
bld00071 Fatty acid metabolism SBML MML
bld00072 Synthesis and degradation of ketone bodies SBML MML
bld00100 (Undocumented) SBML MML
bld00120 (Undocumented) SBML MML
bld00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bld00220 (Undocumented) SBML MML
bld00230 Purine metabolism SBML MML
bld00240 Pyrimidine metabolism SBML MML
bld00251 (Undocumented) SBML MML
bld00252 (Undocumented) SBML MML
bld00260 Glycine, serine and threonine metabolism SBML MML
bld00271 (Undocumented) SBML MML
bld00272 (Undocumented) SBML MML
bld00280 Valine, leucine and isoleucine degradation SBML MML
bld00281 Geraniol degradation SBML MML
bld00290 Valine, leucine and isoleucine biosynthesis SBML MML
bld00300 Lysine biosynthesis SBML MML
bld00310 Lysine degradation SBML MML
bld00311 Penicillin and cephalosporin biosynthesis SBML MML
bld00330 Arginine and proline metabolism SBML MML
bld00340 Histidine metabolism SBML MML
bld00350 Tyrosine metabolism SBML MML
bld00360 Phenylalanine metabolism SBML MML
bld00361 gamma-Hexachlorocyclohexane degradation SBML MML
bld00362 (Undocumented) SBML MML
bld00363 Bisphenol A degradation SBML MML
bld00380 Tryptophan metabolism SBML MML
bld00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bld00401 Novobiocin biosynthesis SBML MML
bld00410 beta-Alanine metabolism SBML MML
bld00430 Taurine and hypotaurine metabolism SBML MML
bld00440 Phosphonate and phosphinate metabolism SBML MML
bld00450 Selenoamino acid metabolism SBML MML
bld00460 (Undocumented) SBML MML
bld00471 D-Glutamine and D-glutamate metabolism SBML MML
bld00472 D-Arginine and D-ornithine metabolism SBML MML
bld00473 D-Alanine metabolism SBML MML
bld00480 Glutathione metabolism SBML MML
bld00500 Starch and sucrose metabolism SBML MML
bld00510 (Undocumented) SBML MML
bld00520 Amino sugar and nucleotide sugar metabolism SBML MML
bld00521 Streptomycin biosynthesis SBML MML
bld00530 (Undocumented) SBML MML
bld00550 Peptidoglycan biosynthesis SBML MML
bld00561 Glycerolipid metabolism SBML MML
bld00562 Inositol phosphate metabolism SBML MML
bld00564 Glycerophospholipid metabolism SBML MML
bld00590 Arachidonic acid metabolism SBML MML
bld00592 alpha-Linolenic acid metabolism SBML MML
bld00600 Sphingolipid metabolism SBML MML
bld00620 Pyruvate metabolism SBML MML
bld00624 1- and 2-Methylnaphthalene degradation SBML MML
bld00626 Naphthalene and anthracene degradation SBML MML
bld00628 Fluorene degradation SBML MML
bld00630 Glyoxylate and dicarboxylate metabolism SBML MML
bld00631 1,2-Dichloroethane degradation SBML MML
bld00632 (Undocumented) SBML MML
bld00640 Propanoate metabolism SBML MML
bld00641 3-Chloroacrylic acid degradation SBML MML
bld00642 Ethylbenzene degradation SBML MML
bld00650 Butanoate metabolism SBML MML
bld00660 C5-Branched dibasic acid metabolism SBML MML
bld00670 One carbon pool by folate SBML MML
bld00680 Methane metabolism SBML MML
bld00710 (Undocumented) SBML MML
bld00720 (Undocumented) SBML MML
bld00730 Thiamine metabolism SBML MML
bld00740 Riboflavin metabolism SBML MML
bld00750 Vitamin B6 metabolism SBML MML
bld00760 Nicotinate and nicotinamide metabolism SBML MML
bld00770 Pantothenate and CoA biosynthesis SBML MML
bld00780 Biotin metabolism SBML MML
bld00785 Lipoic acid metabolism SBML MML
bld00790 Folate biosynthesis SBML MML
bld00860 Porphyrin and chlorophyll metabolism SBML MML
bld00900 Terpenoid backbone biosynthesis SBML MML
bld00903 (Undocumented) SBML MML
bld00910 Nitrogen metabolism SBML MML
bld00920 Sulfur metabolism SBML MML
bld00930 Caprolactam degradation SBML MML
bld00940 (Undocumented) SBML MML
bld00941 (Undocumented) SBML MML
bld00950 (Undocumented) SBML MML
bld00960 (Undocumented) SBML MML
bld00970 Aminoacyl-tRNA biosynthesis SBML MML
bld00982 (Undocumented) SBML MML
bld00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.