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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bja: Bradyrhizobium japonicum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bja00010 Glycolysis / Gluconeogenesis SBML MML
bja00020 Citrate cycle (TCA cycle) SBML MML
bja00030 Pentose phosphate pathway SBML MML
bja00031 (Undocumented) SBML MML
bja00040 Pentose and glucuronate interconversions SBML MML
bja00051 Fructose and mannose metabolism SBML MML
bja00052 Galactose metabolism SBML MML
bja00053 Ascorbate and aldarate metabolism SBML MML
bja00061 Fatty acid biosynthesis SBML MML
bja00062 Fatty acid elongation in mitochondria SBML MML
bja00071 Fatty acid metabolism SBML MML
bja00072 Synthesis and degradation of ketone bodies SBML MML
bja00100 (Undocumented) SBML MML
bja00120 (Undocumented) SBML MML
bja00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bja00150 Androgen and estrogen metabolism SBML MML
bja00220 (Undocumented) SBML MML
bja00230 Purine metabolism SBML MML
bja00240 Pyrimidine metabolism SBML MML
bja00251 (Undocumented) SBML MML
bja00252 (Undocumented) SBML MML
bja00260 Glycine, serine and threonine metabolism SBML MML
bja00271 (Undocumented) SBML MML
bja00272 (Undocumented) SBML MML
bja00280 Valine, leucine and isoleucine degradation SBML MML
bja00281 Geraniol degradation SBML MML
bja00290 Valine, leucine and isoleucine biosynthesis SBML MML
bja00300 Lysine biosynthesis SBML MML
bja00310 Lysine degradation SBML MML
bja00330 Arginine and proline metabolism SBML MML
bja00340 Histidine metabolism SBML MML
bja00350 Tyrosine metabolism SBML MML
bja00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bja00360 Phenylalanine metabolism SBML MML
bja00361 gamma-Hexachlorocyclohexane degradation SBML MML
bja00362 (Undocumented) SBML MML
bja00363 Bisphenol A degradation SBML MML
bja00364 Fluorobenzoate degradation SBML MML
bja00380 Tryptophan metabolism SBML MML
bja00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bja00401 Novobiocin biosynthesis SBML MML
bja00410 beta-Alanine metabolism SBML MML
bja00430 Taurine and hypotaurine metabolism SBML MML
bja00440 Phosphonate and phosphinate metabolism SBML MML
bja00450 Selenoamino acid metabolism SBML MML
bja00460 (Undocumented) SBML MML
bja00471 D-Glutamine and D-glutamate metabolism SBML MML
bja00472 D-Arginine and D-ornithine metabolism SBML MML
bja00473 D-Alanine metabolism SBML MML
bja00480 Glutathione metabolism SBML MML
bja00500 Starch and sucrose metabolism SBML MML
bja00520 Amino sugar and nucleotide sugar metabolism SBML MML
bja00521 Streptomycin biosynthesis SBML MML
bja00530 (Undocumented) SBML MML
bja00540 Lipopolysaccharide biosynthesis SBML MML
bja00550 Peptidoglycan biosynthesis SBML MML
bja00561 Glycerolipid metabolism SBML MML
bja00562 Inositol phosphate metabolism SBML MML
bja00564 Glycerophospholipid metabolism SBML MML
bja00590 Arachidonic acid metabolism SBML MML
bja00592 alpha-Linolenic acid metabolism SBML MML
bja00620 Pyruvate metabolism SBML MML
bja00622 Toluene and xylene degradation SBML MML
bja00623 2,4-Dichlorobenzoate degradation SBML MML
bja00624 1- and 2-Methylnaphthalene degradation SBML MML
bja00625 (Undocumented) SBML MML
bja00626 Naphthalene and anthracene degradation SBML MML
bja00627 1,4-Dichlorobenzene degradation SBML MML
bja00628 Fluorene degradation SBML MML
bja00630 Glyoxylate and dicarboxylate metabolism SBML MML
bja00631 1,2-Dichloroethane degradation SBML MML
bja00632 (Undocumented) SBML MML
bja00640 Propanoate metabolism SBML MML
bja00641 3-Chloroacrylic acid degradation SBML MML
bja00642 Ethylbenzene degradation SBML MML
bja00643 Styrene degradation SBML MML
bja00650 Butanoate metabolism SBML MML
bja00660 C5-Branched dibasic acid metabolism SBML MML
bja00670 One carbon pool by folate SBML MML
bja00680 Methane metabolism SBML MML
bja00710 (Undocumented) SBML MML
bja00720 (Undocumented) SBML MML
bja00730 Thiamine metabolism SBML MML
bja00740 Riboflavin metabolism SBML MML
bja00750 Vitamin B6 metabolism SBML MML
bja00760 Nicotinate and nicotinamide metabolism SBML MML
bja00770 Pantothenate and CoA biosynthesis SBML MML
bja00780 Biotin metabolism SBML MML
bja00785 Lipoic acid metabolism SBML MML
bja00790 Folate biosynthesis SBML MML
bja00791 Atrazine degradation SBML MML
bja00860 Porphyrin and chlorophyll metabolism SBML MML
bja00900 Terpenoid backbone biosynthesis SBML MML
bja00903 (Undocumented) SBML MML
bja00910 Nitrogen metabolism SBML MML
bja00920 Sulfur metabolism SBML MML
bja00930 Caprolactam degradation SBML MML
bja00940 (Undocumented) SBML MML
bja00941 (Undocumented) SBML MML
bja00950 (Undocumented) SBML MML
bja00960 (Undocumented) SBML MML
bja00970 Aminoacyl-tRNA biosynthesis SBML MML
bja00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bja00982 (Undocumented) SBML MML
bja00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.