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Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bid: Beijerinckia indica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bid00010 Glycolysis / Gluconeogenesis SBML MML
bid00020 Citrate cycle (TCA cycle) SBML MML
bid00030 Pentose phosphate pathway SBML MML
bid00031 (Undocumented) SBML MML
bid00040 Pentose and glucuronate interconversions SBML MML
bid00051 Fructose and mannose metabolism SBML MML
bid00052 Galactose metabolism SBML MML
bid00053 Ascorbate and aldarate metabolism SBML MML
bid00061 Fatty acid biosynthesis SBML MML
bid00062 Fatty acid elongation in mitochondria SBML MML
bid00071 Fatty acid metabolism SBML MML
bid00072 Synthesis and degradation of ketone bodies SBML MML
bid00100 (Undocumented) SBML MML
bid00120 (Undocumented) SBML MML
bid00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bid00150 Androgen and estrogen metabolism SBML MML
bid00220 (Undocumented) SBML MML
bid00230 Purine metabolism SBML MML
bid00240 Pyrimidine metabolism SBML MML
bid00251 (Undocumented) SBML MML
bid00252 (Undocumented) SBML MML
bid00260 Glycine, serine and threonine metabolism SBML MML
bid00271 (Undocumented) SBML MML
bid00272 (Undocumented) SBML MML
bid00280 Valine, leucine and isoleucine degradation SBML MML
bid00281 Geraniol degradation SBML MML
bid00290 Valine, leucine and isoleucine biosynthesis SBML MML
bid00300 Lysine biosynthesis SBML MML
bid00310 Lysine degradation SBML MML
bid00311 Penicillin and cephalosporin biosynthesis SBML MML
bid00330 Arginine and proline metabolism SBML MML
bid00340 Histidine metabolism SBML MML
bid00350 Tyrosine metabolism SBML MML
bid00360 Phenylalanine metabolism SBML MML
bid00361 gamma-Hexachlorocyclohexane degradation SBML MML
bid00362 (Undocumented) SBML MML
bid00363 Bisphenol A degradation SBML MML
bid00364 Fluorobenzoate degradation SBML MML
bid00380 Tryptophan metabolism SBML MML
bid00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bid00401 Novobiocin biosynthesis SBML MML
bid00410 beta-Alanine metabolism SBML MML
bid00430 Taurine and hypotaurine metabolism SBML MML
bid00440 Phosphonate and phosphinate metabolism SBML MML
bid00450 Selenoamino acid metabolism SBML MML
bid00460 (Undocumented) SBML MML
bid00471 D-Glutamine and D-glutamate metabolism SBML MML
bid00472 D-Arginine and D-ornithine metabolism SBML MML
bid00473 D-Alanine metabolism SBML MML
bid00480 Glutathione metabolism SBML MML
bid00500 Starch and sucrose metabolism SBML MML
bid00520 Amino sugar and nucleotide sugar metabolism SBML MML
bid00521 Streptomycin biosynthesis SBML MML
bid00523 Polyketide sugar unit biosynthesis SBML MML
bid00530 (Undocumented) SBML MML
bid00540 Lipopolysaccharide biosynthesis SBML MML
bid00550 Peptidoglycan biosynthesis SBML MML
bid00561 Glycerolipid metabolism SBML MML
bid00562 Inositol phosphate metabolism SBML MML
bid00564 Glycerophospholipid metabolism SBML MML
bid00565 Ether lipid metabolism SBML MML
bid00590 Arachidonic acid metabolism SBML MML
bid00592 alpha-Linolenic acid metabolism SBML MML
bid00600 Sphingolipid metabolism SBML MML
bid00620 Pyruvate metabolism SBML MML
bid00622 Toluene and xylene degradation SBML MML
bid00624 1- and 2-Methylnaphthalene degradation SBML MML
bid00625 (Undocumented) SBML MML
bid00626 Naphthalene and anthracene degradation SBML MML
bid00627 1,4-Dichlorobenzene degradation SBML MML
bid00628 Fluorene degradation SBML MML
bid00630 Glyoxylate and dicarboxylate metabolism SBML MML
bid00631 1,2-Dichloroethane degradation SBML MML
bid00632 (Undocumented) SBML MML
bid00633 Trinitrotoluene degradation SBML MML
bid00640 Propanoate metabolism SBML MML
bid00641 3-Chloroacrylic acid degradation SBML MML
bid00642 Ethylbenzene degradation SBML MML
bid00643 Styrene degradation SBML MML
bid00650 Butanoate metabolism SBML MML
bid00660 C5-Branched dibasic acid metabolism SBML MML
bid00670 One carbon pool by folate SBML MML
bid00680 Methane metabolism SBML MML
bid00710 (Undocumented) SBML MML
bid00720 (Undocumented) SBML MML
bid00730 Thiamine metabolism SBML MML
bid00740 Riboflavin metabolism SBML MML
bid00750 Vitamin B6 metabolism SBML MML
bid00760 Nicotinate and nicotinamide metabolism SBML MML
bid00770 Pantothenate and CoA biosynthesis SBML MML
bid00780 Biotin metabolism SBML MML
bid00785 Lipoic acid metabolism SBML MML
bid00790 Folate biosynthesis SBML MML
bid00791 Atrazine degradation SBML MML
bid00860 Porphyrin and chlorophyll metabolism SBML MML
bid00900 Terpenoid backbone biosynthesis SBML MML
bid00903 (Undocumented) SBML MML
bid00910 Nitrogen metabolism SBML MML
bid00920 Sulfur metabolism SBML MML
bid00930 Caprolactam degradation SBML MML
bid00940 (Undocumented) SBML MML
bid00941 (Undocumented) SBML MML
bid00950 (Undocumented) SBML MML
bid00960 (Undocumented) SBML MML
bid00970 Aminoacyl-tRNA biosynthesis SBML MML
bid00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bid00982 (Undocumented) SBML MML
bid00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.