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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bha: Bacillus halodurans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bha00010 Glycolysis / Gluconeogenesis SBML MML
bha00020 Citrate cycle (TCA cycle) SBML MML
bha00030 Pentose phosphate pathway SBML MML
bha00031 (Undocumented) SBML MML
bha00040 Pentose and glucuronate interconversions SBML MML
bha00051 Fructose and mannose metabolism SBML MML
bha00052 Galactose metabolism SBML MML
bha00053 Ascorbate and aldarate metabolism SBML MML
bha00061 Fatty acid biosynthesis SBML MML
bha00062 Fatty acid elongation in mitochondria SBML MML
bha00071 Fatty acid metabolism SBML MML
bha00072 Synthesis and degradation of ketone bodies SBML MML
bha00100 (Undocumented) SBML MML
bha00120 (Undocumented) SBML MML
bha00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bha00220 (Undocumented) SBML MML
bha00230 Purine metabolism SBML MML
bha00240 Pyrimidine metabolism SBML MML
bha00251 (Undocumented) SBML MML
bha00252 (Undocumented) SBML MML
bha00260 Glycine, serine and threonine metabolism SBML MML
bha00271 (Undocumented) SBML MML
bha00272 (Undocumented) SBML MML
bha00280 Valine, leucine and isoleucine degradation SBML MML
bha00281 Geraniol degradation SBML MML
bha00290 Valine, leucine and isoleucine biosynthesis SBML MML
bha00300 Lysine biosynthesis SBML MML
bha00310 Lysine degradation SBML MML
bha00330 Arginine and proline metabolism SBML MML
bha00340 Histidine metabolism SBML MML
bha00350 Tyrosine metabolism SBML MML
bha00360 Phenylalanine metabolism SBML MML
bha00362 (Undocumented) SBML MML
bha00380 Tryptophan metabolism SBML MML
bha00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bha00401 Novobiocin biosynthesis SBML MML
bha00410 beta-Alanine metabolism SBML MML
bha00430 Taurine and hypotaurine metabolism SBML MML
bha00440 Phosphonate and phosphinate metabolism SBML MML
bha00450 Selenoamino acid metabolism SBML MML
bha00460 (Undocumented) SBML MML
bha00471 D-Glutamine and D-glutamate metabolism SBML MML
bha00472 D-Arginine and D-ornithine metabolism SBML MML
bha00473 D-Alanine metabolism SBML MML
bha00480 Glutathione metabolism SBML MML
bha00500 Starch and sucrose metabolism SBML MML
bha00510 (Undocumented) SBML MML
bha00520 Amino sugar and nucleotide sugar metabolism SBML MML
bha00521 Streptomycin biosynthesis SBML MML
bha00523 Polyketide sugar unit biosynthesis SBML MML
bha00530 (Undocumented) SBML MML
bha00550 Peptidoglycan biosynthesis SBML MML
bha00561 Glycerolipid metabolism SBML MML
bha00562 Inositol phosphate metabolism SBML MML
bha00564 Glycerophospholipid metabolism SBML MML
bha00590 Arachidonic acid metabolism SBML MML
bha00592 alpha-Linolenic acid metabolism SBML MML
bha00600 Sphingolipid metabolism SBML MML
bha00620 Pyruvate metabolism SBML MML
bha00622 Toluene and xylene degradation SBML MML
bha00624 1- and 2-Methylnaphthalene degradation SBML MML
bha00628 Fluorene degradation SBML MML
bha00630 Glyoxylate and dicarboxylate metabolism SBML MML
bha00632 (Undocumented) SBML MML
bha00640 Propanoate metabolism SBML MML
bha00641 3-Chloroacrylic acid degradation SBML MML
bha00642 Ethylbenzene degradation SBML MML
bha00650 Butanoate metabolism SBML MML
bha00660 C5-Branched dibasic acid metabolism SBML MML
bha00670 One carbon pool by folate SBML MML
bha00680 Methane metabolism SBML MML
bha00710 (Undocumented) SBML MML
bha00720 (Undocumented) SBML MML
bha00730 Thiamine metabolism SBML MML
bha00740 Riboflavin metabolism SBML MML
bha00750 Vitamin B6 metabolism SBML MML
bha00760 Nicotinate and nicotinamide metabolism SBML MML
bha00770 Pantothenate and CoA biosynthesis SBML MML
bha00780 Biotin metabolism SBML MML
bha00785 Lipoic acid metabolism SBML MML
bha00790 Folate biosynthesis SBML MML
bha00860 Porphyrin and chlorophyll metabolism SBML MML
bha00900 Terpenoid backbone biosynthesis SBML MML
bha00903 (Undocumented) SBML MML
bha00910 Nitrogen metabolism SBML MML
bha00920 Sulfur metabolism SBML MML
bha00930 Caprolactam degradation SBML MML
bha00940 (Undocumented) SBML MML
bha00941 (Undocumented) SBML MML
bha00950 (Undocumented) SBML MML
bha00960 (Undocumented) SBML MML
bha00970 Aminoacyl-tRNA biosynthesis SBML MML
bha00982 (Undocumented) SBML MML
bha00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.