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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bga: Borrelia garinii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bga00010 Glycolysis / Gluconeogenesis SBML MML
bga00030 Pentose phosphate pathway SBML MML
bga00051 Fructose and mannose metabolism SBML MML
bga00052 Galactose metabolism SBML MML
bga00071 Fatty acid metabolism SBML MML
bga00072 Synthesis and degradation of ketone bodies SBML MML
bga00100 (Undocumented) SBML MML
bga00220 (Undocumented) SBML MML
bga00230 Purine metabolism SBML MML
bga00240 Pyrimidine metabolism SBML MML
bga00251 (Undocumented) SBML MML
bga00252 (Undocumented) SBML MML
bga00260 Glycine, serine and threonine metabolism SBML MML
bga00271 (Undocumented) SBML MML
bga00272 (Undocumented) SBML MML
bga00280 Valine, leucine and isoleucine degradation SBML MML
bga00290 Valine, leucine and isoleucine biosynthesis SBML MML
bga00300 Lysine biosynthesis SBML MML
bga00330 Arginine and proline metabolism SBML MML
bga00340 Histidine metabolism SBML MML
bga00380 Tryptophan metabolism SBML MML
bga00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bga00430 Taurine and hypotaurine metabolism SBML MML
bga00450 Selenoamino acid metabolism SBML MML
bga00471 D-Glutamine and D-glutamate metabolism SBML MML
bga00473 D-Alanine metabolism SBML MML
bga00500 Starch and sucrose metabolism SBML MML
bga00530 (Undocumented) SBML MML
bga00550 Peptidoglycan biosynthesis SBML MML
bga00561 Glycerolipid metabolism SBML MML
bga00564 Glycerophospholipid metabolism SBML MML
bga00620 Pyruvate metabolism SBML MML
bga00630 Glyoxylate and dicarboxylate metabolism SBML MML
bga00632 (Undocumented) SBML MML
bga00640 Propanoate metabolism SBML MML
bga00650 Butanoate metabolism SBML MML
bga00670 One carbon pool by folate SBML MML
bga00710 (Undocumented) SBML MML
bga00730 Thiamine metabolism SBML MML
bga00750 Vitamin B6 metabolism SBML MML
bga00760 Nicotinate and nicotinamide metabolism SBML MML
bga00770 Pantothenate and CoA biosynthesis SBML MML
bga00790 Folate biosynthesis SBML MML
bga00900 Terpenoid backbone biosynthesis SBML MML
bga00970 Aminoacyl-tRNA biosynthesis SBML MML
bga00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.