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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bfs: Bacteroides fragilis NCTC9343

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bfs00010 Glycolysis / Gluconeogenesis SBML MML
bfs00020 Citrate cycle (TCA cycle) SBML MML
bfs00030 Pentose phosphate pathway SBML MML
bfs00040 Pentose and glucuronate interconversions SBML MML
bfs00051 Fructose and mannose metabolism SBML MML
bfs00052 Galactose metabolism SBML MML
bfs00061 Fatty acid biosynthesis SBML MML
bfs00100 (Undocumented) SBML MML
bfs00120 (Undocumented) SBML MML
bfs00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bfs00150 Androgen and estrogen metabolism SBML MML
bfs00220 (Undocumented) SBML MML
bfs00230 Purine metabolism SBML MML
bfs00240 Pyrimidine metabolism SBML MML
bfs00251 (Undocumented) SBML MML
bfs00252 (Undocumented) SBML MML
bfs00260 Glycine, serine and threonine metabolism SBML MML
bfs00271 (Undocumented) SBML MML
bfs00272 (Undocumented) SBML MML
bfs00280 Valine, leucine and isoleucine degradation SBML MML
bfs00281 Geraniol degradation SBML MML
bfs00290 Valine, leucine and isoleucine biosynthesis SBML MML
bfs00300 Lysine biosynthesis SBML MML
bfs00330 Arginine and proline metabolism SBML MML
bfs00340 Histidine metabolism SBML MML
bfs00350 Tyrosine metabolism SBML MML
bfs00360 Phenylalanine metabolism SBML MML
bfs00361 gamma-Hexachlorocyclohexane degradation SBML MML
bfs00363 Bisphenol A degradation SBML MML
bfs00380 Tryptophan metabolism SBML MML
bfs00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bfs00401 Novobiocin biosynthesis SBML MML
bfs00410 beta-Alanine metabolism SBML MML
bfs00430 Taurine and hypotaurine metabolism SBML MML
bfs00440 Phosphonate and phosphinate metabolism SBML MML
bfs00450 Selenoamino acid metabolism SBML MML
bfs00460 (Undocumented) SBML MML
bfs00471 D-Glutamine and D-glutamate metabolism SBML MML
bfs00473 D-Alanine metabolism SBML MML
bfs00480 Glutathione metabolism SBML MML
bfs00500 Starch and sucrose metabolism SBML MML
bfs00520 Amino sugar and nucleotide sugar metabolism SBML MML
bfs00521 Streptomycin biosynthesis SBML MML
bfs00523 Polyketide sugar unit biosynthesis SBML MML
bfs00530 (Undocumented) SBML MML
bfs00540 Lipopolysaccharide biosynthesis SBML MML
bfs00550 Peptidoglycan biosynthesis SBML MML
bfs00561 Glycerolipid metabolism SBML MML
bfs00562 Inositol phosphate metabolism SBML MML
bfs00564 Glycerophospholipid metabolism SBML MML
bfs00590 Arachidonic acid metabolism SBML MML
bfs00600 Sphingolipid metabolism SBML MML
bfs00620 Pyruvate metabolism SBML MML
bfs00624 1- and 2-Methylnaphthalene degradation SBML MML
bfs00626 Naphthalene and anthracene degradation SBML MML
bfs00630 Glyoxylate and dicarboxylate metabolism SBML MML
bfs00632 (Undocumented) SBML MML
bfs00640 Propanoate metabolism SBML MML
bfs00650 Butanoate metabolism SBML MML
bfs00660 C5-Branched dibasic acid metabolism SBML MML
bfs00670 One carbon pool by folate SBML MML
bfs00680 Methane metabolism SBML MML
bfs00710 (Undocumented) SBML MML
bfs00720 (Undocumented) SBML MML
bfs00730 Thiamine metabolism SBML MML
bfs00740 Riboflavin metabolism SBML MML
bfs00750 Vitamin B6 metabolism SBML MML
bfs00760 Nicotinate and nicotinamide metabolism SBML MML
bfs00770 Pantothenate and CoA biosynthesis SBML MML
bfs00780 Biotin metabolism SBML MML
bfs00785 Lipoic acid metabolism SBML MML
bfs00790 Folate biosynthesis SBML MML
bfs00860 Porphyrin and chlorophyll metabolism SBML MML
bfs00900 Terpenoid backbone biosynthesis SBML MML
bfs00903 (Undocumented) SBML MML
bfs00910 Nitrogen metabolism SBML MML
bfs00920 Sulfur metabolism SBML MML
bfs00940 (Undocumented) SBML MML
bfs00950 (Undocumented) SBML MML
bfs00960 (Undocumented) SBML MML
bfs00970 Aminoacyl-tRNA biosynthesis SBML MML
bfs00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.