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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bcn: Burkholderia cenocepacia AU1054

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bcn00010 Glycolysis / Gluconeogenesis SBML MML
bcn00020 Citrate cycle (TCA cycle) SBML MML
bcn00030 Pentose phosphate pathway SBML MML
bcn00031 (Undocumented) SBML MML
bcn00040 Pentose and glucuronate interconversions SBML MML
bcn00051 Fructose and mannose metabolism SBML MML
bcn00052 Galactose metabolism SBML MML
bcn00053 Ascorbate and aldarate metabolism SBML MML
bcn00061 Fatty acid biosynthesis SBML MML
bcn00062 Fatty acid elongation in mitochondria SBML MML
bcn00071 Fatty acid metabolism SBML MML
bcn00072 Synthesis and degradation of ketone bodies SBML MML
bcn00100 (Undocumented) SBML MML
bcn00120 (Undocumented) SBML MML
bcn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bcn00220 (Undocumented) SBML MML
bcn00230 Purine metabolism SBML MML
bcn00240 Pyrimidine metabolism SBML MML
bcn00251 (Undocumented) SBML MML
bcn00252 (Undocumented) SBML MML
bcn00260 Glycine, serine and threonine metabolism SBML MML
bcn00271 (Undocumented) SBML MML
bcn00272 (Undocumented) SBML MML
bcn00280 Valine, leucine and isoleucine degradation SBML MML
bcn00281 Geraniol degradation SBML MML
bcn00290 Valine, leucine and isoleucine biosynthesis SBML MML
bcn00300 Lysine biosynthesis SBML MML
bcn00310 Lysine degradation SBML MML
bcn00311 Penicillin and cephalosporin biosynthesis SBML MML
bcn00330 Arginine and proline metabolism SBML MML
bcn00340 Histidine metabolism SBML MML
bcn00350 Tyrosine metabolism SBML MML
bcn00360 Phenylalanine metabolism SBML MML
bcn00361 gamma-Hexachlorocyclohexane degradation SBML MML
bcn00362 (Undocumented) SBML MML
bcn00364 Fluorobenzoate degradation SBML MML
bcn00380 Tryptophan metabolism SBML MML
bcn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bcn00401 Novobiocin biosynthesis SBML MML
bcn00410 beta-Alanine metabolism SBML MML
bcn00430 Taurine and hypotaurine metabolism SBML MML
bcn00440 Phosphonate and phosphinate metabolism SBML MML
bcn00450 Selenoamino acid metabolism SBML MML
bcn00460 (Undocumented) SBML MML
bcn00471 D-Glutamine and D-glutamate metabolism SBML MML
bcn00472 D-Arginine and D-ornithine metabolism SBML MML
bcn00473 D-Alanine metabolism SBML MML
bcn00480 Glutathione metabolism SBML MML
bcn00500 Starch and sucrose metabolism SBML MML
bcn00520 Amino sugar and nucleotide sugar metabolism SBML MML
bcn00521 Streptomycin biosynthesis SBML MML
bcn00523 Polyketide sugar unit biosynthesis SBML MML
bcn00530 (Undocumented) SBML MML
bcn00540 Lipopolysaccharide biosynthesis SBML MML
bcn00550 Peptidoglycan biosynthesis SBML MML
bcn00561 Glycerolipid metabolism SBML MML
bcn00562 Inositol phosphate metabolism SBML MML
bcn00564 Glycerophospholipid metabolism SBML MML
bcn00565 Ether lipid metabolism SBML MML
bcn00590 Arachidonic acid metabolism SBML MML
bcn00620 Pyruvate metabolism SBML MML
bcn00622 Toluene and xylene degradation SBML MML
bcn00623 2,4-Dichlorobenzoate degradation SBML MML
bcn00624 1- and 2-Methylnaphthalene degradation SBML MML
bcn00626 Naphthalene and anthracene degradation SBML MML
bcn00627 1,4-Dichlorobenzene degradation SBML MML
bcn00628 Fluorene degradation SBML MML
bcn00630 Glyoxylate and dicarboxylate metabolism SBML MML
bcn00631 1,2-Dichloroethane degradation SBML MML
bcn00632 (Undocumented) SBML MML
bcn00633 Trinitrotoluene degradation SBML MML
bcn00640 Propanoate metabolism SBML MML
bcn00641 3-Chloroacrylic acid degradation SBML MML
bcn00643 Styrene degradation SBML MML
bcn00650 Butanoate metabolism SBML MML
bcn00660 C5-Branched dibasic acid metabolism SBML MML
bcn00670 One carbon pool by folate SBML MML
bcn00680 Methane metabolism SBML MML
bcn00710 (Undocumented) SBML MML
bcn00720 (Undocumented) SBML MML
bcn00730 Thiamine metabolism SBML MML
bcn00740 Riboflavin metabolism SBML MML
bcn00750 Vitamin B6 metabolism SBML MML
bcn00760 Nicotinate and nicotinamide metabolism SBML MML
bcn00770 Pantothenate and CoA biosynthesis SBML MML
bcn00780 Biotin metabolism SBML MML
bcn00785 Lipoic acid metabolism SBML MML
bcn00790 Folate biosynthesis SBML MML
bcn00791 Atrazine degradation SBML MML
bcn00860 Porphyrin and chlorophyll metabolism SBML MML
bcn00900 Terpenoid backbone biosynthesis SBML MML
bcn00903 (Undocumented) SBML MML
bcn00910 Nitrogen metabolism SBML MML
bcn00920 Sulfur metabolism SBML MML
bcn00930 Caprolactam degradation SBML MML
bcn00940 (Undocumented) SBML MML
bcn00941 (Undocumented) SBML MML
bcn00950 (Undocumented) SBML MML
bcn00960 (Undocumented) SBML MML
bcn00970 Aminoacyl-tRNA biosynthesis SBML MML
bcn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bcn00982 (Undocumented) SBML MML
bcn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.