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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bce: Bacillus cereus ATCC 14579

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bce00010 Glycolysis / Gluconeogenesis SBML MML
bce00020 Citrate cycle (TCA cycle) SBML MML
bce00030 Pentose phosphate pathway SBML MML
bce00040 Pentose and glucuronate interconversions SBML MML
bce00051 Fructose and mannose metabolism SBML MML
bce00052 Galactose metabolism SBML MML
bce00053 Ascorbate and aldarate metabolism SBML MML
bce00061 Fatty acid biosynthesis SBML MML
bce00062 Fatty acid elongation in mitochondria SBML MML
bce00071 Fatty acid metabolism SBML MML
bce00072 Synthesis and degradation of ketone bodies SBML MML
bce00100 (Undocumented) SBML MML
bce00120 (Undocumented) SBML MML
bce00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bce00150 Androgen and estrogen metabolism SBML MML
bce00220 (Undocumented) SBML MML
bce00230 Purine metabolism SBML MML
bce00240 Pyrimidine metabolism SBML MML
bce00251 (Undocumented) SBML MML
bce00252 (Undocumented) SBML MML
bce00260 Glycine, serine and threonine metabolism SBML MML
bce00271 (Undocumented) SBML MML
bce00272 (Undocumented) SBML MML
bce00280 Valine, leucine and isoleucine degradation SBML MML
bce00281 Geraniol degradation SBML MML
bce00290 Valine, leucine and isoleucine biosynthesis SBML MML
bce00300 Lysine biosynthesis SBML MML
bce00310 Lysine degradation SBML MML
bce00311 Penicillin and cephalosporin biosynthesis SBML MML
bce00330 Arginine and proline metabolism SBML MML
bce00340 Histidine metabolism SBML MML
bce00350 Tyrosine metabolism SBML MML
bce00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bce00360 Phenylalanine metabolism SBML MML
bce00361 gamma-Hexachlorocyclohexane degradation SBML MML
bce00362 (Undocumented) SBML MML
bce00363 Bisphenol A degradation SBML MML
bce00380 Tryptophan metabolism SBML MML
bce00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bce00401 Novobiocin biosynthesis SBML MML
bce00410 beta-Alanine metabolism SBML MML
bce00430 Taurine and hypotaurine metabolism SBML MML
bce00440 Phosphonate and phosphinate metabolism SBML MML
bce00450 Selenoamino acid metabolism SBML MML
bce00460 (Undocumented) SBML MML
bce00471 D-Glutamine and D-glutamate metabolism SBML MML
bce00472 D-Arginine and D-ornithine metabolism SBML MML
bce00473 D-Alanine metabolism SBML MML
bce00480 Glutathione metabolism SBML MML
bce00500 Starch and sucrose metabolism SBML MML
bce00510 (Undocumented) SBML MML
bce00520 Amino sugar and nucleotide sugar metabolism SBML MML
bce00521 Streptomycin biosynthesis SBML MML
bce00523 Polyketide sugar unit biosynthesis SBML MML
bce00530 (Undocumented) SBML MML
bce00550 Peptidoglycan biosynthesis SBML MML
bce00561 Glycerolipid metabolism SBML MML
bce00562 Inositol phosphate metabolism SBML MML
bce00564 Glycerophospholipid metabolism SBML MML
bce00565 Ether lipid metabolism SBML MML
bce00590 Arachidonic acid metabolism SBML MML
bce00620 Pyruvate metabolism SBML MML
bce00624 1- and 2-Methylnaphthalene degradation SBML MML
bce00626 Naphthalene and anthracene degradation SBML MML
bce00630 Glyoxylate and dicarboxylate metabolism SBML MML
bce00631 1,2-Dichloroethane degradation SBML MML
bce00632 (Undocumented) SBML MML
bce00640 Propanoate metabolism SBML MML
bce00641 3-Chloroacrylic acid degradation SBML MML
bce00643 Styrene degradation SBML MML
bce00650 Butanoate metabolism SBML MML
bce00660 C5-Branched dibasic acid metabolism SBML MML
bce00670 One carbon pool by folate SBML MML
bce00680 Methane metabolism SBML MML
bce00710 (Undocumented) SBML MML
bce00720 (Undocumented) SBML MML
bce00730 Thiamine metabolism SBML MML
bce00740 Riboflavin metabolism SBML MML
bce00750 Vitamin B6 metabolism SBML MML
bce00760 Nicotinate and nicotinamide metabolism SBML MML
bce00770 Pantothenate and CoA biosynthesis SBML MML
bce00780 Biotin metabolism SBML MML
bce00785 Lipoic acid metabolism SBML MML
bce00790 Folate biosynthesis SBML MML
bce00860 Porphyrin and chlorophyll metabolism SBML MML
bce00900 Terpenoid backbone biosynthesis SBML MML
bce00903 (Undocumented) SBML MML
bce00910 Nitrogen metabolism SBML MML
bce00920 Sulfur metabolism SBML MML
bce00930 Caprolactam degradation SBML MML
bce00940 (Undocumented) SBML MML
bce00960 (Undocumented) SBML MML
bce00970 Aminoacyl-tRNA biosynthesis SBML MML
bce00982 (Undocumented) SBML MML
bce00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.