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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bbt: Bradyrhizobium sp. BTAi1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bbt00010 Glycolysis / Gluconeogenesis SBML MML
bbt00020 Citrate cycle (TCA cycle) SBML MML
bbt00030 Pentose phosphate pathway SBML MML
bbt00031 (Undocumented) SBML MML
bbt00040 Pentose and glucuronate interconversions SBML MML
bbt00051 Fructose and mannose metabolism SBML MML
bbt00052 Galactose metabolism SBML MML
bbt00053 Ascorbate and aldarate metabolism SBML MML
bbt00061 Fatty acid biosynthesis SBML MML
bbt00062 Fatty acid elongation in mitochondria SBML MML
bbt00071 Fatty acid metabolism SBML MML
bbt00072 Synthesis and degradation of ketone bodies SBML MML
bbt00100 (Undocumented) SBML MML
bbt00120 (Undocumented) SBML MML
bbt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bbt00150 Androgen and estrogen metabolism SBML MML
bbt00220 (Undocumented) SBML MML
bbt00230 Purine metabolism SBML MML
bbt00240 Pyrimidine metabolism SBML MML
bbt00251 (Undocumented) SBML MML
bbt00252 (Undocumented) SBML MML
bbt00260 Glycine, serine and threonine metabolism SBML MML
bbt00271 (Undocumented) SBML MML
bbt00272 (Undocumented) SBML MML
bbt00280 Valine, leucine and isoleucine degradation SBML MML
bbt00281 Geraniol degradation SBML MML
bbt00290 Valine, leucine and isoleucine biosynthesis SBML MML
bbt00300 Lysine biosynthesis SBML MML
bbt00310 Lysine degradation SBML MML
bbt00330 Arginine and proline metabolism SBML MML
bbt00340 Histidine metabolism SBML MML
bbt00350 Tyrosine metabolism SBML MML
bbt00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bbt00360 Phenylalanine metabolism SBML MML
bbt00361 gamma-Hexachlorocyclohexane degradation SBML MML
bbt00362 (Undocumented) SBML MML
bbt00363 Bisphenol A degradation SBML MML
bbt00364 Fluorobenzoate degradation SBML MML
bbt00380 Tryptophan metabolism SBML MML
bbt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bbt00401 Novobiocin biosynthesis SBML MML
bbt00410 beta-Alanine metabolism SBML MML
bbt00430 Taurine and hypotaurine metabolism SBML MML
bbt00450 Selenoamino acid metabolism SBML MML
bbt00460 (Undocumented) SBML MML
bbt00471 D-Glutamine and D-glutamate metabolism SBML MML
bbt00472 D-Arginine and D-ornithine metabolism SBML MML
bbt00473 D-Alanine metabolism SBML MML
bbt00480 Glutathione metabolism SBML MML
bbt00500 Starch and sucrose metabolism SBML MML
bbt00520 Amino sugar and nucleotide sugar metabolism SBML MML
bbt00521 Streptomycin biosynthesis SBML MML
bbt00523 Polyketide sugar unit biosynthesis SBML MML
bbt00530 (Undocumented) SBML MML
bbt00540 Lipopolysaccharide biosynthesis SBML MML
bbt00550 Peptidoglycan biosynthesis SBML MML
bbt00561 Glycerolipid metabolism SBML MML
bbt00562 Inositol phosphate metabolism SBML MML
bbt00564 Glycerophospholipid metabolism SBML MML
bbt00565 Ether lipid metabolism SBML MML
bbt00590 Arachidonic acid metabolism SBML MML
bbt00592 alpha-Linolenic acid metabolism SBML MML
bbt00620 Pyruvate metabolism SBML MML
bbt00622 Toluene and xylene degradation SBML MML
bbt00623 2,4-Dichlorobenzoate degradation SBML MML
bbt00624 1- and 2-Methylnaphthalene degradation SBML MML
bbt00625 (Undocumented) SBML MML
bbt00626 Naphthalene and anthracene degradation SBML MML
bbt00627 1,4-Dichlorobenzene degradation SBML MML
bbt00628 Fluorene degradation SBML MML
bbt00630 Glyoxylate and dicarboxylate metabolism SBML MML
bbt00631 1,2-Dichloroethane degradation SBML MML
bbt00632 (Undocumented) SBML MML
bbt00633 Trinitrotoluene degradation SBML MML
bbt00640 Propanoate metabolism SBML MML
bbt00641 3-Chloroacrylic acid degradation SBML MML
bbt00642 Ethylbenzene degradation SBML MML
bbt00643 Styrene degradation SBML MML
bbt00650 Butanoate metabolism SBML MML
bbt00660 C5-Branched dibasic acid metabolism SBML MML
bbt00670 One carbon pool by folate SBML MML
bbt00680 Methane metabolism SBML MML
bbt00710 (Undocumented) SBML MML
bbt00720 (Undocumented) SBML MML
bbt00730 Thiamine metabolism SBML MML
bbt00740 Riboflavin metabolism SBML MML
bbt00750 Vitamin B6 metabolism SBML MML
bbt00760 Nicotinate and nicotinamide metabolism SBML MML
bbt00770 Pantothenate and CoA biosynthesis SBML MML
bbt00780 Biotin metabolism SBML MML
bbt00785 Lipoic acid metabolism SBML MML
bbt00790 Folate biosynthesis SBML MML
bbt00791 Atrazine degradation SBML MML
bbt00860 Porphyrin and chlorophyll metabolism SBML MML
bbt00900 Terpenoid backbone biosynthesis SBML MML
bbt00903 (Undocumented) SBML MML
bbt00906 Carotenoid biosynthesis SBML MML
bbt00910 Nitrogen metabolism SBML MML
bbt00920 Sulfur metabolism SBML MML
bbt00930 Caprolactam degradation SBML MML
bbt00940 (Undocumented) SBML MML
bbt00941 (Undocumented) SBML MML
bbt00950 (Undocumented) SBML MML
bbt00960 (Undocumented) SBML MML
bbt00970 Aminoacyl-tRNA biosynthesis SBML MML
bbt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bbt00982 (Undocumented) SBML MML
bbt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.