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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bba: Bdellovibrio bacteriovorus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bba00010 Glycolysis / Gluconeogenesis SBML MML
bba00020 Citrate cycle (TCA cycle) SBML MML
bba00030 Pentose phosphate pathway SBML MML
bba00031 (Undocumented) SBML MML
bba00040 Pentose and glucuronate interconversions SBML MML
bba00051 Fructose and mannose metabolism SBML MML
bba00052 Galactose metabolism SBML MML
bba00061 Fatty acid biosynthesis SBML MML
bba00062 Fatty acid elongation in mitochondria SBML MML
bba00071 Fatty acid metabolism SBML MML
bba00072 Synthesis and degradation of ketone bodies SBML MML
bba00100 (Undocumented) SBML MML
bba00120 (Undocumented) SBML MML
bba00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bba00220 (Undocumented) SBML MML
bba00230 Purine metabolism SBML MML
bba00240 Pyrimidine metabolism SBML MML
bba00251 (Undocumented) SBML MML
bba00252 (Undocumented) SBML MML
bba00260 Glycine, serine and threonine metabolism SBML MML
bba00271 (Undocumented) SBML MML
bba00272 (Undocumented) SBML MML
bba00280 Valine, leucine and isoleucine degradation SBML MML
bba00281 Geraniol degradation SBML MML
bba00290 Valine, leucine and isoleucine biosynthesis SBML MML
bba00300 Lysine biosynthesis SBML MML
bba00310 Lysine degradation SBML MML
bba00311 Penicillin and cephalosporin biosynthesis SBML MML
bba00330 Arginine and proline metabolism SBML MML
bba00340 Histidine metabolism SBML MML
bba00350 Tyrosine metabolism SBML MML
bba00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bba00360 Phenylalanine metabolism SBML MML
bba00361 gamma-Hexachlorocyclohexane degradation SBML MML
bba00362 (Undocumented) SBML MML
bba00364 Fluorobenzoate degradation SBML MML
bba00380 Tryptophan metabolism SBML MML
bba00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bba00401 Novobiocin biosynthesis SBML MML
bba00410 beta-Alanine metabolism SBML MML
bba00430 Taurine and hypotaurine metabolism SBML MML
bba00440 Phosphonate and phosphinate metabolism SBML MML
bba00450 Selenoamino acid metabolism SBML MML
bba00460 (Undocumented) SBML MML
bba00471 D-Glutamine and D-glutamate metabolism SBML MML
bba00473 D-Alanine metabolism SBML MML
bba00480 Glutathione metabolism SBML MML
bba00500 Starch and sucrose metabolism SBML MML
bba00510 (Undocumented) SBML MML
bba00520 Amino sugar and nucleotide sugar metabolism SBML MML
bba00521 Streptomycin biosynthesis SBML MML
bba00523 Polyketide sugar unit biosynthesis SBML MML
bba00530 (Undocumented) SBML MML
bba00540 Lipopolysaccharide biosynthesis SBML MML
bba00550 Peptidoglycan biosynthesis SBML MML
bba00561 Glycerolipid metabolism SBML MML
bba00562 Inositol phosphate metabolism SBML MML
bba00564 Glycerophospholipid metabolism SBML MML
bba00590 Arachidonic acid metabolism SBML MML
bba00592 alpha-Linolenic acid metabolism SBML MML
bba00620 Pyruvate metabolism SBML MML
bba00622 Toluene and xylene degradation SBML MML
bba00624 1- and 2-Methylnaphthalene degradation SBML MML
bba00626 Naphthalene and anthracene degradation SBML MML
bba00627 1,4-Dichlorobenzene degradation SBML MML
bba00630 Glyoxylate and dicarboxylate metabolism SBML MML
bba00632 (Undocumented) SBML MML
bba00640 Propanoate metabolism SBML MML
bba00641 3-Chloroacrylic acid degradation SBML MML
bba00642 Ethylbenzene degradation SBML MML
bba00643 Styrene degradation SBML MML
bba00650 Butanoate metabolism SBML MML
bba00670 One carbon pool by folate SBML MML
bba00680 Methane metabolism SBML MML
bba00710 (Undocumented) SBML MML
bba00720 (Undocumented) SBML MML
bba00730 Thiamine metabolism SBML MML
bba00740 Riboflavin metabolism SBML MML
bba00750 Vitamin B6 metabolism SBML MML
bba00760 Nicotinate and nicotinamide metabolism SBML MML
bba00770 Pantothenate and CoA biosynthesis SBML MML
bba00780 Biotin metabolism SBML MML
bba00785 Lipoic acid metabolism SBML MML
bba00790 Folate biosynthesis SBML MML
bba00860 Porphyrin and chlorophyll metabolism SBML MML
bba00900 Terpenoid backbone biosynthesis SBML MML
bba00903 (Undocumented) SBML MML
bba00906 Carotenoid biosynthesis SBML MML
bba00910 Nitrogen metabolism SBML MML
bba00920 Sulfur metabolism SBML MML
bba00930 Caprolactam degradation SBML MML
bba00941 (Undocumented) SBML MML
bba00960 (Undocumented) SBML MML
bba00970 Aminoacyl-tRNA biosynthesis SBML MML
bba00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bba00982 (Undocumented) SBML MML
bba00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.